alpha: Use little endian packet accessors.

We know data is little endian, so we can use those accessors
explicitly.

Change-Id: Ieb9c1eb8a4fec31ee69cbbfd8c1afdf9f64de366
Reviewed-on: https://gem5-review.googlesource.com/c/13459
Reviewed-by: Andreas Sandberg <andreas.sandberg@arm.com>
Maintainer: Gabe Black <gabeblack@google.com>

style: [patch 1/22] use /r/3648/ to reorganize includes

style: fix missing spaces in control statements

Result of running 'hg m5style --skip-all --fix-control -a'.

sim: Refactor the serialization base class

Objects that are can be serialized are supposed to inherit from the
Serializable class. This class is meant to provide a unified API for
such objects. However, so far it has mainly been used by SimObjects
due to some fundamental design limitations. This changeset redesigns
to the serialization interface to make it more generic and hide the
underlying checkpoint storage. Specifically:

* Add a set of APIs to serialize into a subsection of the current
object. Previously, objects that needed this functionality would
use ad-hoc solutions using nameOut() and section name
generation. In the new world, an object that implements the
interface has the methods serializeSection() and
unserializeSection() that serialize into a named /subsection/ of
the current object. Calling serialize() serializes an object into
the current section.

* Move the name() method from Serializable to SimObject as it is no
longer needed for serialization. The fully qualified section name
is generated by the main serialization code on the fly as objects
serialize sub-objects.

* Add a scoped ScopedCheckpointSection helper class. Some objects
need to serialize data structures, that are not deriving from
Serializable, into subsections. Previously, this was done using
nameOut() and manual section name generation. To simplify this,
this changeset introduces a ScopedCheckpointSection() helper
class. When this class is instantiated, it adds a new /subsection/
and subsequent serialization calls during the lifetime of this
helper class happen inside this section (or a subsection in case
of nested sections).

* The serialize() call is now const which prevents accidental state
manipulation during serialization. Objects that rely on modifying
state can use the serializeOld() call instead. The default
implementation simply calls serialize(). Note: The old-style calls
need to be explicitly called using the
serializeOld()/serializeSectionOld() style APIs. These are used by
default when serializing SimObjects.

* Both the input and output checkpoints now use their own named
types. This hides underlying checkpoint implementation from
objects that need checkpointing and makes it easier to change the
underlying checkpoint storage code.

mem: Remove redundant Packet::allocate calls

This patch cleans up the packet memory allocation confusion. The data
is always allocated at the requesting side, when a packet is created
(or copied), and there is never a need for any device to allocate any
space if it is merely responding to a paket. This behaviour is in line
with how SystemC and TLM works as well, thus increasing
interoperability, and matching established conventions.

The redundant calls to Packet::allocate are removed, and the checks in
the function are tightened up to make sure data is only ever allocated
once. There are still some oddities in the packet copy constructor
where we copy the data pointer if it is static (without ownership),
and allocate new space if the data is dynamic (with ownership). The
latter is being worked on further in a follow-on patch.

dev: make BasicPioDevice take size in constructor

Instead of relying on derived classes explicitly assigning
to the BasicPioDevice pioSize field, require them to pass
a size value in to the constructor.

Committed by: Nilay Vaish <nilay@cs.wisc.edu>

clang: Enable compiling gem5 using clang 2.9 and 3.0

This patch adds the necessary flags to the SConstruct and SConscript
files for compiling using clang 2.9 and later (on Ubuntu et al and OSX
XCode 4.2), and also cleans up a bunch of compiler warnings found by
clang. Most of the warnings are related to hidden virtual functions,
comparisons with unsigneds >= 0, and if-statements with empty
bodies. A number of mismatches between struct and class are also
fixed. clang 2.8 is not working as it has problems with class names
that occur in multiple namespaces (e.g. Statistics in
kernel_stats.hh).

clang has a bug (http://llvm.org/bugs/show_bug.cgi?id=7247) which
causes confusion between the container std::set and the function
Packet::set, and this is currently addressed by not including the
entire namespace std, but rather selecting e.g. "using std::vector" in
the appropriate places.

trace: reimplement the DTRACE function so it doesn't use a vector
At the same time, rename the trace flags to debug flags since they
have broader usage than simply tracing. This means that
--trace-flags is now --debug-flags and --trace-help is now --debug-help

arch: nuke arch/isa_specific.hh and move stuff to generated config/the_isa.hh

Add in Context IDs to the simulator. From now on, cpuId is almost never used,
the primary identifier for a hardware context should be contextId(). The
concept of threads within a CPU remains, in the form of threadId() because
sometimes you need to know which context within a cpu to manipulate.

gcc: Add extra parens to quell warnings.
Even though we're not incorrect about operator precedence, let's add
some parens in some particularly confusing places to placate GCC 4.3
so that we don't have to turn the warning off. Agreed that this is a
bit of a pain for those users who get the order of operations correct,
but it is likely to prevent bugs in certain cases.

Merge python and x86 changes with cache branch

Merge of DPRINTF fixes from head.

Get rid of Packet result field. Error responses are
now encoded in cmd field.

Major changes to how SimObjects are created and initialized. Almost all
creation and initialization now happens in python. Parameter objects
are generated and initialized by python. The .ini file is now solely for
debugging purposes and is not used in construction of the objects in any
way.

Fix & tweak DPRINTFs for tracediff w/new cache code.
Note that we should *not* print pointer values in DPRINTFs as
these needlessly clutter tracediff output.

Implement Niagara I/O interface and rework interrupts

configs/common/FSConfig.py:
Use binaries we've compiled instead of the ones that come with Legion
src/arch/alpha/interrupts.hh:
get rid of post(int int_type) and add a get_vec function that gets the interrupt vector for an interrupt number
src/arch/sparc/asi.cc:
Add AsiIsInterrupt() to AsiIsMmu()
src/arch/sparc/faults.cc:
src/arch/sparc/faults.hh:
Add InterruptVector type
src/arch/sparc/interrupts.hh:
rework interrupts. They are no longer cleared when created... A I/O or ASI read/write needs to happen before they are cleared
src/arch/sparc/isa_traits.hh:
Add the "interrupt" trap types to isa traits
src/arch/sparc/miscregfile.cc:
add names for all the misc registers and possible post an interrupt when TL is changed.
src/arch/sparc/miscregfile.hh:
Add a helper function to post an interrupt when pil < some set softint
src/arch/sparc/regfile.cc:
src/arch/sparc/regfile.hh:
InterruptLevel shouldn't really live here, moved to interrupt.hh
src/arch/sparc/tlb.cc:
Add interrupt ASIs to TLB
src/arch/sparc/ua2005.cc:
Add checkSoftInt to check if a softint needs to be posted
Check that a tickCompare isn't scheduled before scheduling one
Post and clear interrupts on queue writes and what not
src/base/bitfield.hh:
Add an helper function to return the msb that is set
src/cpu/base.cc:
src/cpu/base.hh:
get rid of post_interrupt(type) since it's no longer needed.. Add a way to see what interrupts are pending
src/cpu/intr_control.cc:
src/cpu/intr_control.hh:
src/dev/alpha/tsunami_cchip.cc:
src/python/m5/objects/IntrControl.py:
Make IntrControl have a system pointer rather than using a cpu pointer to get one
src/dev/sparc/SConscript:
add iob to SConsscrip
tests/quick/10.linux-boot/ref/alpha/linux/tsunami-simple-atomic-dual/config.ini:
tests/quick/10.linux-boot/ref/alpha/linux/tsunami-simple-atomic-dual/config.out:
tests/quick/10.linux-boot/ref/alpha/linux/tsunami-simple-atomic/config.ini:
tests/quick/10.linux-boot/ref/alpha/linux/tsunami-simple-atomic/config.out:
tests/quick/10.linux-boot/ref/alpha/linux/tsunami-simple-timing-dual/config.ini:
tests/quick/10.linux-boot/ref/alpha/linux/tsunami-simple-timing-dual/config.out:
tests/quick/10.linux-boot/ref/alpha/linux/tsunami-simple-timing/config.ini:
tests/quick/10.linux-boot/ref/alpha/linux/tsunami-simple-timing/config.out:
tests/quick/80.netperf-stream/ref/alpha/linux/twosys-tsunami-simple-atomic/config.ini:
tests/quick/80.netperf-stream/ref/alpha/linux/twosys-tsunami-simple-atomic/config.out:
update config.ini/out for intrcntrl not having a cpu pointer anymore

Make sure that all of the bits in the result are set
to some value.

little fixes i noticed while searching for reason for address range issues (but these weren't the cause of the problem).

RangeSize as a function takes a start address, and a SIZE, and will make the range (start, start+size-1) for you.

src/cpu/memtest/memtest.hh:
src/cpu/o3/fetch.hh:
src/cpu/o3/lsq.hh:
src/cpu/ozone/front_end.hh:
src/cpu/ozone/lw_lsq.hh:
src/cpu/simple/atomic.hh:
src/cpu/simple/timing.hh:
Fix RangeSize arguments
src/dev/alpha/tsunami_cchip.cc:
src/dev/alpha/tsunami_io.cc:
src/dev/alpha/tsunami_pchip.cc:
src/dev/baddev.cc:
pioSize indicates SIZE, not a mask

Moved the tsunami devices into the dev/alpha directory. Other devices "generic" devices are dependent on some of those files. That will either need to change, or most likely those devices will have to be considered architecture dependent.