LSQ: Set store predictor to periodically clear itself as recommended in the storesets paper.

This patch improves performance by as much as 10% on some spec benchmarks.

types: add a type for thread IDs and try to use it everywhere

includes: sort includes again

types: Move stuff for global types into src/base/types.hh

Cleaned up include files and got rid of many using directives in header files.

Merge ktlim@zamp:/z/ktlim2/clean/m5-o3
into zamp.eecs.umich.edu:/z/ktlim2/clean/newmem-merge

src/cpu/checker/o3_cpu_builder.cc:
src/cpu/o3/alpha_cpu.hh:
src/cpu/o3/alpha_cpu_impl.hh:
src/cpu/o3/alpha_dyn_inst_impl.hh:
src/cpu/o3/bpred_unit.cc:
src/cpu/o3/commit.hh:
src/cpu/o3/fetch_impl.hh:
src/cpu/o3/lsq_unit.hh:
src/cpu/o3/lsq_unit_impl.hh:
src/cpu/o3/thread_state.hh:
Hand merge.

Merge ktlim@zizzer:/bk/newmem
into zizzer.eecs.umich.edu:/.automount/zamp/z/ktlim2/clean/newmem

Updated Authors from bk prs info

Merge ktlim@zizzer:/bk/m5
into zamp.eecs.umich.edu:/z/ktlim2/clean/newmem

SConstruct:
src/SConscript:
src/arch/SConscript:
src/arch/alpha/faults.cc:
src/arch/alpha/tlb.cc:
src/base/traceflags.py:
src/cpu/SConscript:
src/cpu/base.cc:
src/cpu/base.hh:
src/cpu/base_dyn_inst.cc:
src/cpu/cpu_exec_context.cc:
src/cpu/cpu_exec_context.hh:
src/cpu/exec_context.hh:
src/cpu/o3/alpha_cpu.hh:
src/cpu/o3/alpha_cpu_impl.hh:
src/cpu/o3/alpha_dyn_inst.hh:
src/cpu/o3/cpu.cc:
src/cpu/o3/cpu.hh:
src/cpu/o3/regfile.hh:
src/cpu/ozone/cpu.hh:
src/cpu/simple/base.cc:
src/cpu/base_dyn_inst.hh:
src/cpu/o3/2bit_local_pred.cc:
src/cpu/o3/2bit_local_pred.hh:
src/cpu/o3/alpha_cpu.cc:
src/cpu/o3/alpha_cpu_builder.cc:
src/cpu/o3/alpha_dyn_inst.cc:
src/cpu/o3/alpha_dyn_inst_impl.hh:
src/cpu/o3/alpha_impl.hh:
src/cpu/o3/alpha_params.hh:
src/cpu/o3/bpred_unit.cc:
src/cpu/o3/bpred_unit.hh:
src/cpu/o3/bpred_unit_impl.hh:
src/cpu/o3/btb.cc:
src/cpu/o3/btb.hh:
src/cpu/o3/comm.hh:
src/cpu/o3/commit.cc:
src/cpu/o3/commit.hh:
src/cpu/o3/commit_impl.hh:
src/cpu/o3/cpu_policy.hh:
src/cpu/o3/decode.cc:
src/cpu/o3/decode.hh:
src/cpu/o3/decode_impl.hh:
src/cpu/o3/fetch.cc:
src/cpu/o3/fetch.hh:
src/cpu/o3/fetch_impl.hh:
src/cpu/o3/free_list.cc:
src/cpu/o3/free_list.hh:
src/cpu/o3/iew.cc:
src/cpu/o3/iew.hh:
src/cpu/o3/iew_impl.hh:
src/cpu/o3/inst_queue.cc:
src/cpu/o3/inst_queue.hh:
src/cpu/o3/inst_queue_impl.hh:
src/cpu/o3/mem_dep_unit.cc:
src/cpu/o3/mem_dep_unit.hh:
src/cpu/o3/mem_dep_unit_impl.hh:
src/cpu/o3/ras.cc:
src/cpu/o3/ras.hh:
src/cpu/o3/rename.cc:
src/cpu/o3/rename.hh:
src/cpu/o3/rename_impl.hh:
src/cpu/o3/rename_map.cc:
src/cpu/o3/rename_map.hh:
src/cpu/o3/rob.cc:
src/cpu/o3/rob.hh:
src/cpu/o3/rob_impl.hh:
src/cpu/o3/sat_counter.cc:
src/cpu/o3/sat_counter.hh:
src/cpu/o3/store_set.cc:
src/cpu/o3/store_set.hh:
src/cpu/o3/tournament_pred.cc:
src/cpu/o3/tournament_pred.hh:
Hand merges.

New directory structure:
- simulator source now in 'src' subdirectory
- imported files from 'ext' repository
- support building in arbitrary places, including
outside of the source tree. See comment at top
of SConstruct file for more details.
Regression tests are temporarily disabled; that
syetem needs more extensive revisions.

SConstruct:
Update for new directory structure.
Modify to support build trees that are not subdirectories
of the source tree. See comment at top of file for
more details.
Regression tests are temporarily disabled.
src/arch/SConscript:
src/arch/isa_parser.py:
src/python/SConscript:
Update for new directory structure.