style: [patch 1/22] use /r/3648/ to reorganize includes

isa,cpu: Add support for FS SMT Interrupts

Adds per-thread interrupt controllers and thread/context logic
so that interrupts properly get routed in SMT systems.

SE/FS: Get rid of FULL_SYSTEM in the CPU directory.

SE/FS: Build the devices in SE mode.

trace: reimplement the DTRACE function so it doesn't use a vector
At the same time, rename the trace flags to debug flags since they
have broader usage than simply tracing. This means that
--trace-flags is now --debug-flags and --trace-help is now --debug-help

includes: sort all includes

style: Use the correct m5 style for things relating to interrupts.

Interrupts: Inline some code and remove duplication.

params: Deprecate old-style constructors; update most SimObject constructors.

SimObjects not yet updated:
- Process and subclasses
- BaseCPU and subclasses

The SimObject(const std::string &name) constructor was removed. Subclasses
that still rely on that behavior must call the parent initializer as
: SimObject(makeParams(name))

Major changes to how SimObjects are created and initialized. Almost all
creation and initialization now happens in python. Parameter objects
are generated and initialized by python. The .ini file is now solely for
debugging purposes and is not used in construction of the objects in any
way.

Implement Niagara I/O interface and rework interrupts

configs/common/FSConfig.py:
Use binaries we've compiled instead of the ones that come with Legion
src/arch/alpha/interrupts.hh:
get rid of post(int int_type) and add a get_vec function that gets the interrupt vector for an interrupt number
src/arch/sparc/asi.cc:
Add AsiIsInterrupt() to AsiIsMmu()
src/arch/sparc/faults.cc:
src/arch/sparc/faults.hh:
Add InterruptVector type
src/arch/sparc/interrupts.hh:
rework interrupts. They are no longer cleared when created... A I/O or ASI read/write needs to happen before they are cleared
src/arch/sparc/isa_traits.hh:
Add the "interrupt" trap types to isa traits
src/arch/sparc/miscregfile.cc:
add names for all the misc registers and possible post an interrupt when TL is changed.
src/arch/sparc/miscregfile.hh:
Add a helper function to post an interrupt when pil < some set softint
src/arch/sparc/regfile.cc:
src/arch/sparc/regfile.hh:
InterruptLevel shouldn't really live here, moved to interrupt.hh
src/arch/sparc/tlb.cc:
Add interrupt ASIs to TLB
src/arch/sparc/ua2005.cc:
Add checkSoftInt to check if a softint needs to be posted
Check that a tickCompare isn't scheduled before scheduling one
Post and clear interrupts on queue writes and what not
src/base/bitfield.hh:
Add an helper function to return the msb that is set
src/cpu/base.cc:
src/cpu/base.hh:
get rid of post_interrupt(type) since it's no longer needed.. Add a way to see what interrupts are pending
src/cpu/intr_control.cc:
src/cpu/intr_control.hh:
src/dev/alpha/tsunami_cchip.cc:
src/python/m5/objects/IntrControl.py:
Make IntrControl have a system pointer rather than using a cpu pointer to get one
src/dev/sparc/SConscript:
add iob to SConsscrip
tests/quick/10.linux-boot/ref/alpha/linux/tsunami-simple-atomic-dual/config.ini:
tests/quick/10.linux-boot/ref/alpha/linux/tsunami-simple-atomic-dual/config.out:
tests/quick/10.linux-boot/ref/alpha/linux/tsunami-simple-atomic/config.ini:
tests/quick/10.linux-boot/ref/alpha/linux/tsunami-simple-atomic/config.out:
tests/quick/10.linux-boot/ref/alpha/linux/tsunami-simple-timing-dual/config.ini:
tests/quick/10.linux-boot/ref/alpha/linux/tsunami-simple-timing-dual/config.out:
tests/quick/10.linux-boot/ref/alpha/linux/tsunami-simple-timing/config.ini:
tests/quick/10.linux-boot/ref/alpha/linux/tsunami-simple-timing/config.out:
tests/quick/80.netperf-stream/ref/alpha/linux/twosys-tsunami-simple-atomic/config.ini:
tests/quick/80.netperf-stream/ref/alpha/linux/twosys-tsunami-simple-atomic/config.out:
update config.ini/out for intrcntrl not having a cpu pointer anymore

Change ExecContext to ThreadContext. This is being renamed to differentiate between the interface used objects outside of the CPU, and the interface used by the ISA. ThreadContext is used by objects outside of the CPU and is specifically defined in thread_context.hh. ExecContext is more implicit, and is defined by files such as base_dyn_inst.hh or cpu/simple/base.hh.

Further renames/reorganization will be coming shortly; what is currently CPUExecContext (the old ExecContext from m5) will be renamed to SimpleThread or something similar.

src/arch/alpha/arguments.cc:
src/arch/alpha/arguments.hh:
src/arch/alpha/ev5.cc:
src/arch/alpha/faults.cc:
src/arch/alpha/faults.hh:
src/arch/alpha/freebsd/system.cc:
src/arch/alpha/freebsd/system.hh:
src/arch/alpha/isa/branch.isa:
src/arch/alpha/isa/decoder.isa:
src/arch/alpha/isa/main.isa:
src/arch/alpha/linux/process.cc:
src/arch/alpha/linux/system.cc:
src/arch/alpha/linux/system.hh:
src/arch/alpha/linux/threadinfo.hh:
src/arch/alpha/process.cc:
src/arch/alpha/regfile.hh:
src/arch/alpha/stacktrace.cc:
src/arch/alpha/stacktrace.hh:
src/arch/alpha/tlb.cc:
src/arch/alpha/tlb.hh:
src/arch/alpha/tru64/process.cc:
src/arch/alpha/tru64/system.cc:
src/arch/alpha/tru64/system.hh:
src/arch/alpha/utility.hh:
src/arch/alpha/vtophys.cc:
src/arch/alpha/vtophys.hh:
src/arch/mips/faults.cc:
src/arch/mips/faults.hh:
src/arch/mips/isa_traits.cc:
src/arch/mips/isa_traits.hh:
src/arch/mips/linux/process.cc:
src/arch/mips/process.cc:
src/arch/mips/regfile/float_regfile.hh:
src/arch/mips/regfile/int_regfile.hh:
src/arch/mips/regfile/misc_regfile.hh:
src/arch/mips/regfile/regfile.hh:
src/arch/mips/stacktrace.hh:
src/arch/sparc/faults.cc:
src/arch/sparc/faults.hh:
src/arch/sparc/isa_traits.hh:
src/arch/sparc/linux/process.cc:
src/arch/sparc/linux/process.hh:
src/arch/sparc/process.cc:
src/arch/sparc/regfile.hh:
src/arch/sparc/solaris/process.cc:
src/arch/sparc/stacktrace.hh:
src/arch/sparc/ua2005.cc:
src/arch/sparc/utility.hh:
src/arch/sparc/vtophys.cc:
src/arch/sparc/vtophys.hh:
src/base/remote_gdb.cc:
src/base/remote_gdb.hh:
src/cpu/base.cc:
src/cpu/base.hh:
src/cpu/base_dyn_inst.hh:
src/cpu/checker/cpu.cc:
src/cpu/checker/cpu.hh:
src/cpu/checker/exec_context.hh:
src/cpu/cpu_exec_context.cc:
src/cpu/cpu_exec_context.hh:
src/cpu/cpuevent.cc:
src/cpu/cpuevent.hh:
src/cpu/exetrace.hh:
src/cpu/intr_control.cc:
src/cpu/memtest/memtest.hh:
src/cpu/o3/alpha_cpu.hh:
src/cpu/o3/alpha_cpu_impl.hh:
src/cpu/o3/alpha_dyn_inst_impl.hh:
src/cpu/o3/commit.hh:
src/cpu/o3/commit_impl.hh:
src/cpu/o3/cpu.cc:
src/cpu/o3/cpu.hh:
src/cpu/o3/fetch_impl.hh:
src/cpu/o3/regfile.hh:
src/cpu/o3/thread_state.hh:
src/cpu/ozone/back_end.hh:
src/cpu/ozone/cpu.hh:
src/cpu/ozone/cpu_impl.hh:
src/cpu/ozone/front_end.hh:
src/cpu/ozone/front_end_impl.hh:
src/cpu/ozone/inorder_back_end.hh:
src/cpu/ozone/lw_back_end.hh:
src/cpu/ozone/lw_back_end_impl.hh:
src/cpu/ozone/lw_lsq.hh:
src/cpu/ozone/lw_lsq_impl.hh:
src/cpu/ozone/thread_state.hh:
src/cpu/pc_event.cc:
src/cpu/pc_event.hh:
src/cpu/profile.cc:
src/cpu/profile.hh:
src/cpu/quiesce_event.cc:
src/cpu/quiesce_event.hh:
src/cpu/simple/atomic.cc:
src/cpu/simple/base.cc:
src/cpu/simple/base.hh:
src/cpu/simple/timing.cc:
src/cpu/static_inst.cc:
src/cpu/static_inst.hh:
src/cpu/thread_state.hh:
src/dev/alpha_console.cc:
src/dev/ns_gige.cc:
src/dev/sinic.cc:
src/dev/tsunami_cchip.cc:
src/kern/kernel_stats.cc:
src/kern/kernel_stats.hh:
src/kern/linux/events.cc:
src/kern/linux/events.hh:
src/kern/system_events.cc:
src/kern/system_events.hh:
src/kern/tru64/dump_mbuf.cc:
src/kern/tru64/tru64.hh:
src/kern/tru64/tru64_events.cc:
src/kern/tru64/tru64_events.hh:
src/mem/vport.cc:
src/mem/vport.hh:
src/sim/faults.cc:
src/sim/faults.hh:
src/sim/process.cc:
src/sim/process.hh:
src/sim/pseudo_inst.cc:
src/sim/pseudo_inst.hh:
src/sim/syscall_emul.cc:
src/sim/syscall_emul.hh:
src/sim/system.cc:
src/cpu/thread_context.hh:
src/sim/system.hh:
src/sim/vptr.hh:
Change ExecContext to ThreadContext.

Updated Authors from bk prs info

New directory structure:
- simulator source now in 'src' subdirectory
- imported files from 'ext' repository
- support building in arbitrary places, including
outside of the source tree. See comment at top
of SConstruct file for more details.
Regression tests are temporarily disabled; that
syetem needs more extensive revisions.

SConstruct:
Update for new directory structure.
Modify to support build trees that are not subdirectories
of the source tree. See comment at top of file for
more details.
Regression tests are temporarily disabled.
src/arch/SConscript:
src/arch/isa_parser.py:
src/python/SConscript:
Update for new directory structure.