style: [patch 1/22] use /r/3648/ to reorganize includes

arch: Use const StaticInstPtr references where possible

This patch optimises the passing of StaticInstPtr by avoiding copying
the reference-counting pointer. This avoids first incrementing and
then decrementing the reference-counting pointer.

Merge with head, hopefully the last time for this batch.

Merge yet again with the main repository.

SE/FS: Get rid of FULL_SYSTEM in MIPS.

SE/FS: Use the new FullSystem constant where possible.

clang: Enable compiling gem5 using clang 2.9 and 3.0

This patch adds the necessary flags to the SConstruct and SConscript
files for compiling using clang 2.9 and later (on Ubuntu et al and OSX
XCode 4.2), and also cleans up a bunch of compiler warnings found by
clang. Most of the warnings are related to hidden virtual functions,
comparisons with unsigneds >= 0, and if-statements with empty
bodies. A number of mismatches between struct and class are also
fixed. clang 2.8 is not working as it has problems with class names
that occur in multiple namespaces (e.g. Statistics in
kernel_stats.hh).

clang has a bug (http://llvm.org/bugs/show_bug.cgi?id=7247) which
causes confusion between the container std::set and the function
Packet::set, and this is currently addressed by not including the
entire namespace std, but rather selecting e.g. "using std::vector" in
the appropriate places.

mips: Fix bugs in faults.cc/hh and tlb.cc for MIPS_FS

MIPS: Final overhaul of MIPS faults to kill #if FULL_SYSTEM

This change is a significant reorganization of the MIPS fault code that gets
rid of duplication, fixes some bugs, doubtlessly introduces others, and adds
names for the exception code constants.

MIPS, faults: Update how the PC is set.

MIPS: Use inheritance to consolidate class definitions.

MIPS: Always compile in setExceptionState, including in SE mode.

Also fix the newly exposed and preexisting compile errors. This code hasn't
been exposed in a while, and it's not up to date with the rest of gem5.

MIPS: Consolidate TLB related faults.

Pass in a bool to indicate if the fault is from a store instead of having two
different classes. The classes were also misleadingly named since loads are
also processed by the DTB but should return ITB faults since they aren't
stores. The TLB may be returning the wrong fault in this case, but I haven't
looked at it closely.

MIPS: Consolidate the two AddressErrorFault variants.

MIPS: Get rid of cruft in the fault classes.

Get rid of Fault classes left over from when this file was copied from Alpha,
and rename ArithmeticOverflowFault to be IntegerOverflowFault and get rid of
the old IntegerOverflowFault stub. The Integer version is what's actually in
the manual, but the Arithmetic version had the implementation.

MIPS: Use the CRTP to streamline the Fault class definitions.

CRTP stands for the curiously recurring template pattern.

trace: reimplement the DTRACE function so it doesn't use a vector
At the same time, rename the trace flags to debug flags since they
have broader usage than simply tracing. This means that
--trace-flags is now --debug-flags and --trace-help is now --debug-help

Faults: Pass the StaticInst involved, if any, to a Fault's invoke method.

Also move the "Fault" reference counted pointer type into a separate file,
sim/fault.hh. It would be better to name this less similarly to sim/faults.hh
to reduce confusion, but fault.hh matches the name of the type. We could change
Fault to FaultPtr to match other pointer types, and then changing the name of
the file would make more sense.

style: fix sorting of includes and whitespace in some files

MIPS: Format the register index constants like the other ISAs.
Also a few more style fixes.

MIPS: Get MIPS_FS to compile, more style fixes.
Some breakage was from my BitUnion change, some was much older.

MIPS: Many style fixes.
White space, commented out code, some other minor fixes.

Registers: Eliminate the ISA defined RegFile class.

go back and fix up MIPS copyright headers

fix MIPS headers

Get MIPS simple regression working. Take out unecessary functions "setShadowSet", "CacheOp"

Get MIPS_SE actually working again by actually by fixing TLB stuff and running hello world

Add in files from merge-bare-iron, get them compiling in FS and SE mode

Address translation: Make the page table more flexible.
The page table now stores actual page table entries. It is still a templated
class here, but this will be corrected in the near future.

mips import pt. 1

src/arch/mips/SConscript:
"mips import pt.1".

Move the magic m5 PageTableFault into sim/faults.[hh,cc] since it's the same across all architectures.

This changeset gets the MIPS ISA pretty much working in the O3CPU. It builds, runs, and gets very very close to completing the hello world
succesfully but there are some minor quirks to iron out. Who would've known a DELAY SLOT introduces that much complexity?! arrgh!

Anyways, a lot of this stuff had to do with my project at MIPS and me needing to know how I was going to get this working for the MIPS
ISA. So I figured I would try to touch it up and throw it in here (I hate to introduce non-completely working components... )

src/arch/alpha/isa/mem.isa:
spacing
src/arch/mips/faults.cc:
src/arch/mips/faults.hh:
Gabe really authored this
src/arch/mips/isa/decoder.isa:
add StoreConditional Flag to instruction
src/arch/mips/isa/formats/basic.isa:
Steven really did this file
src/arch/mips/isa/formats/branch.isa:
fix bug for uncond/cond control
src/arch/mips/isa/formats/mem.isa:
Adjust O3CPU memory access to use new memory model interface.
src/arch/mips/isa/formats/util.isa:
update LoadStoreBase template
src/arch/mips/isa_traits.cc:
update SERIALIZE partially
src/arch/mips/process.cc:
src/arch/mips/process.hh:
no need for this for NOW. ASID/Virtual addressing handles it
src/arch/mips/regfile/misc_regfile.hh:
add in clear() function and comments for future usage of special misc. regs
src/cpu/base_dyn_inst.hh:
add in nextNPC variable and supporting functions.

add isCondDelaySlot function

Update predTaken and mispredicted functions
src/cpu/base_dyn_inst_impl.hh:
init nextNPC
src/cpu/o3/SConscript:
add MIPS files to compile
src/cpu/o3/alpha/thread_context.hh:
no need for my name on this file
src/cpu/o3/bpred_unit_impl.hh:
Update RAS appropriately for MIPS
src/cpu/o3/comm.hh:
add some extra communication variables to aid in handling the
delay slots
src/cpu/o3/commit.hh:
minor name fix for nextNPC functions.
src/cpu/o3/commit_impl.hh:
src/cpu/o3/decode_impl.hh:
src/cpu/o3/fetch_impl.hh:
src/cpu/o3/iew_impl.hh:
src/cpu/o3/inst_queue_impl.hh:
src/cpu/o3/rename_impl.hh:
Fix necessary variables and functions for squashes with delay slots
src/cpu/o3/cpu.cc:
Update function interface ...

adjust removeInstsNotInROB function to recognize delay slots insts
src/cpu/o3/cpu.hh:
update removeInstsNotInROB
src/cpu/o3/decode.hh:
declare necessary variables for handling delay slot
src/cpu/o3/dyn_inst.hh:
Add in MipsDynInst
src/cpu/o3/fetch.hh:
src/cpu/o3/iew.hh:
src/cpu/o3/rename.hh:
declare necessary variables and adjust functions for handling delay slot
src/cpu/o3/inst_queue.hh:
src/cpu/simple/base.cc:
no need for my name here
src/cpu/o3/isa_specific.hh:
add in MIPS files
src/cpu/o3/scoreboard.hh:
dont include alpha specific isa traits!
src/cpu/o3/thread_context.hh:
no need for my name here, i just rearranged where the file goes
src/cpu/static_inst.hh:
add isCondDelaySlot function
src/cpu/o3/mips/cpu.cc:
src/cpu/o3/mips/cpu.hh:
src/cpu/o3/mips/cpu_builder.cc:
src/cpu/o3/mips/cpu_impl.hh:
src/cpu/o3/mips/dyn_inst.cc:
src/cpu/o3/mips/dyn_inst.hh:
src/cpu/o3/mips/dyn_inst_impl.hh:
src/cpu/o3/mips/impl.hh:
src/cpu/o3/mips/params.hh:
src/cpu/o3/mips/thread_context.cc:
src/cpu/o3/mips/thread_context.hh:
MIPS file for O3CPU...mirrors ALPHA definition

add syscall emulation page table fault so we can allocate more stack pages

src/cpu/simple/base.cc:
add syscall emulation page table fault so we can allocate more stack pages
FaultBase::invoke will do this, we don't need to do it here
src/sim/faults.hh:
I have no idea why this #if was there... gone
src/sim/process.cc:
make stack_min actually be the current minimum

Change ExecContext to ThreadContext. This is being renamed to differentiate between the interface used objects outside of the CPU, and the interface used by the ISA. ThreadContext is used by objects outside of the CPU and is specifically defined in thread_context.hh. ExecContext is more implicit, and is defined by files such as base_dyn_inst.hh or cpu/simple/base.hh.

Further renames/reorganization will be coming shortly; what is currently CPUExecContext (the old ExecContext from m5) will be renamed to SimpleThread or something similar.

src/arch/alpha/arguments.cc:
src/arch/alpha/arguments.hh:
src/arch/alpha/ev5.cc:
src/arch/alpha/faults.cc:
src/arch/alpha/faults.hh:
src/arch/alpha/freebsd/system.cc:
src/arch/alpha/freebsd/system.hh:
src/arch/alpha/isa/branch.isa:
src/arch/alpha/isa/decoder.isa:
src/arch/alpha/isa/main.isa:
src/arch/alpha/linux/process.cc:
src/arch/alpha/linux/system.cc:
src/arch/alpha/linux/system.hh:
src/arch/alpha/linux/threadinfo.hh:
src/arch/alpha/process.cc:
src/arch/alpha/regfile.hh:
src/arch/alpha/stacktrace.cc:
src/arch/alpha/stacktrace.hh:
src/arch/alpha/tlb.cc:
src/arch/alpha/tlb.hh:
src/arch/alpha/tru64/process.cc:
src/arch/alpha/tru64/system.cc:
src/arch/alpha/tru64/system.hh:
src/arch/alpha/utility.hh:
src/arch/alpha/vtophys.cc:
src/arch/alpha/vtophys.hh:
src/arch/mips/faults.cc:
src/arch/mips/faults.hh:
src/arch/mips/isa_traits.cc:
src/arch/mips/isa_traits.hh:
src/arch/mips/linux/process.cc:
src/arch/mips/process.cc:
src/arch/mips/regfile/float_regfile.hh:
src/arch/mips/regfile/int_regfile.hh:
src/arch/mips/regfile/misc_regfile.hh:
src/arch/mips/regfile/regfile.hh:
src/arch/mips/stacktrace.hh:
src/arch/sparc/faults.cc:
src/arch/sparc/faults.hh:
src/arch/sparc/isa_traits.hh:
src/arch/sparc/linux/process.cc:
src/arch/sparc/linux/process.hh:
src/arch/sparc/process.cc:
src/arch/sparc/regfile.hh:
src/arch/sparc/solaris/process.cc:
src/arch/sparc/stacktrace.hh:
src/arch/sparc/ua2005.cc:
src/arch/sparc/utility.hh:
src/arch/sparc/vtophys.cc:
src/arch/sparc/vtophys.hh:
src/base/remote_gdb.cc:
src/base/remote_gdb.hh:
src/cpu/base.cc:
src/cpu/base.hh:
src/cpu/base_dyn_inst.hh:
src/cpu/checker/cpu.cc:
src/cpu/checker/cpu.hh:
src/cpu/checker/exec_context.hh:
src/cpu/cpu_exec_context.cc:
src/cpu/cpu_exec_context.hh:
src/cpu/cpuevent.cc:
src/cpu/cpuevent.hh:
src/cpu/exetrace.hh:
src/cpu/intr_control.cc:
src/cpu/memtest/memtest.hh:
src/cpu/o3/alpha_cpu.hh:
src/cpu/o3/alpha_cpu_impl.hh:
src/cpu/o3/alpha_dyn_inst_impl.hh:
src/cpu/o3/commit.hh:
src/cpu/o3/commit_impl.hh:
src/cpu/o3/cpu.cc:
src/cpu/o3/cpu.hh:
src/cpu/o3/fetch_impl.hh:
src/cpu/o3/regfile.hh:
src/cpu/o3/thread_state.hh:
src/cpu/ozone/back_end.hh:
src/cpu/ozone/cpu.hh:
src/cpu/ozone/cpu_impl.hh:
src/cpu/ozone/front_end.hh:
src/cpu/ozone/front_end_impl.hh:
src/cpu/ozone/inorder_back_end.hh:
src/cpu/ozone/lw_back_end.hh:
src/cpu/ozone/lw_back_end_impl.hh:
src/cpu/ozone/lw_lsq.hh:
src/cpu/ozone/lw_lsq_impl.hh:
src/cpu/ozone/thread_state.hh:
src/cpu/pc_event.cc:
src/cpu/pc_event.hh:
src/cpu/profile.cc:
src/cpu/profile.hh:
src/cpu/quiesce_event.cc:
src/cpu/quiesce_event.hh:
src/cpu/simple/atomic.cc:
src/cpu/simple/base.cc:
src/cpu/simple/base.hh:
src/cpu/simple/timing.cc:
src/cpu/static_inst.cc:
src/cpu/static_inst.hh:
src/cpu/thread_state.hh:
src/dev/alpha_console.cc:
src/dev/ns_gige.cc:
src/dev/sinic.cc:
src/dev/tsunami_cchip.cc:
src/kern/kernel_stats.cc:
src/kern/kernel_stats.hh:
src/kern/linux/events.cc:
src/kern/linux/events.hh:
src/kern/system_events.cc:
src/kern/system_events.hh:
src/kern/tru64/dump_mbuf.cc:
src/kern/tru64/tru64.hh:
src/kern/tru64/tru64_events.cc:
src/kern/tru64/tru64_events.hh:
src/mem/vport.cc:
src/mem/vport.hh:
src/sim/faults.cc:
src/sim/faults.hh:
src/sim/process.cc:
src/sim/process.hh:
src/sim/pseudo_inst.cc:
src/sim/pseudo_inst.hh:
src/sim/syscall_emul.cc:
src/sim/syscall_emul.hh:
src/sim/system.cc:
src/cpu/thread_context.hh:
src/sim/system.hh:
src/sim/vptr.hh:
Change ExecContext to ThreadContext.

Updated Authors from bk prs info

New directory structure:
- simulator source now in 'src' subdirectory
- imported files from 'ext' repository
- support building in arbitrary places, including
outside of the source tree. See comment at top
of SConstruct file for more details.
Regression tests are temporarily disabled; that
syetem needs more extensive revisions.

SConstruct:
Update for new directory structure.
Modify to support build trees that are not subdirectories
of the source tree. See comment at top of file for
more details.
Regression tests are temporarily disabled.
src/arch/SConscript:
src/arch/isa_parser.py:
src/python/SConscript:
Update for new directory structure.