misc: Using smart pointers for memory Requests

This patch is changing the underlying type for RequestPtr from Request*
to shared_ptr<Request>. Having memory requests being managed by smart
pointers will simplify the code; it will also prevent memory leakage and
dangling pointers.

Change-Id: I7749af38a11ac8eb4d53d8df1252951e0890fde3
Signed-off-by: Giacomo Travaglini <giacomo.travaglini@arm.com>
Reviewed-by: Andreas Sandberg <andreas.sandberg@arm.com>
Reviewed-on: https://gem5-review.googlesource.com/10996
Reviewed-by: Nikos Nikoleris <nikos.nikoleris@arm.com>
Maintainer: Nikos Nikoleris <nikos.nikoleris@arm.com>

arch,cpu: "virtualize" the TLB interface.

CPUs have historically instantiated the architecture specific version
of the TLBs to avoid a virtual function call, making them a little bit
more dependent on what the current ISA is. Some simple performance
measurement, the x86 twolf regression on the atomic CPU, shows that
there isn't actually any performance benefit, and if anything the
simulator goes slightly faster (although still within margin of error)
when the TLB functions are virtual.

This change switches everything outside of the architectures themselves
to use the generic BaseTLB type, and then inside the ISA for them to
cast that to their architecture specific type to call into architecture
specific interfaces.

The ARM TLB needed the most adjustment since it was using non-standard
translation function signatures. Specifically, they all took an extra
"type" parameter which defaulted to normal, and translateTiming
returned a Fault. translateTiming actually doesn't need to return a
Fault because everywhere that consumed it just stored it into a
structure which it then deleted(?), and the fault is stored in the
Translation object when the translation is done.

A little more work is needed to fully obviate the arch/tlb.hh header,
so the TheISA::TLB type is still visible outside of the ISAs.
Specifically, the TlbEntry type is used in the generic PageTable which
lives in src/mem.

Change-Id: I51b68ee74411f9af778317eff222f9349d2ed575
Reviewed-on: https://gem5-review.googlesource.com/6921
Maintainer: Gabe Black <gabeblack@google.com>
Reviewed-by: Jason Lowe-Power <jason@lowepower.com>

misc: Add explicit overrides and fix other clang >= 3.5 issues

This patch adds explicit overrides as this is now required when using
"-Wall" with clang >= 3.5, the latter now part of the most recent
XCode. The patch consequently removes "virtual" for those methods
where "override" is added. The latter should be enough of an
indication.

As part of this patch, a few minor issues that clang >= 3.5 complains
about are also resolved (unused methods and variables).

misc: Remove redundant compiler-specific defines

This patch moves away from using M5_ATTR_OVERRIDE and the m5::hashmap
(and similar) abstractions, as these are no longer needed with gcc 4.7
and clang 3.1 as minimum compiler versions.

sim: Refactor the serialization base class

Objects that are can be serialized are supposed to inherit from the
Serializable class. This class is meant to provide a unified API for
such objects. However, so far it has mainly been used by SimObjects
due to some fundamental design limitations. This changeset redesigns
to the serialization interface to make it more generic and hide the
underlying checkpoint storage. Specifically:

* Add a set of APIs to serialize into a subsection of the current
object. Previously, objects that needed this functionality would
use ad-hoc solutions using nameOut() and section name
generation. In the new world, an object that implements the
interface has the methods serializeSection() and
unserializeSection() that serialize into a named /subsection/ of
the current object. Calling serialize() serializes an object into
the current section.

* Move the name() method from Serializable to SimObject as it is no
longer needed for serialization. The fully qualified section name
is generated by the main serialization code on the fly as objects
serialize sub-objects.

* Add a scoped ScopedCheckpointSection helper class. Some objects
need to serialize data structures, that are not deriving from
Serializable, into subsections. Previously, this was done using
nameOut() and manual section name generation. To simplify this,
this changeset introduces a ScopedCheckpointSection() helper
class. When this class is instantiated, it adds a new /subsection/
and subsequent serialization calls during the lifetime of this
helper class happen inside this section (or a subsection in case
of nested sections).

* The serialize() call is now const which prevents accidental state
manipulation during serialization. Objects that rely on modifying
state can use the serializeOld() call instead. The default
implementation simply calls serialize(). Note: The old-style calls
need to be explicitly called using the
serializeOld()/serializeSectionOld() style APIs. These are used by
default when serializing SimObjects.

* Both the input and output checkpoints now use their own named
types. This hides underlying checkpoint implementation from
objects that need checkpointing and makes it easier to change the
underlying checkpoint storage code.

sim: Move the BaseTLB to src/arch/generic/

The TLB-related code is generally architecture dependent and should
live in the arch directory to signify that.

arch: Use shared_ptr for all Faults

This patch takes quite a large step in transitioning from the ad-hoc
RefCountingPtr to the c++11 shared_ptr by adopting its use for all
Faults. There are no changes in behaviour, and the code modifications
are mostly just replacing "new" with "make_shared".

arch, arm: Preserve TLB bootUncacheability when switching CPUs

The ARM TLBs have a bootUncacheability flag used to make some loads
and stores become uncacheable when booting in FS mode. Later the
flag is cleared to let those loads and stores operate as normal. When
doing a takeOverFrom(), this flag's state is not preserved and is
momentarily reset until the CPSR is touched. On single core runs this
is a non-issue. On multi-core runs this can lead to crashes on the O3
CPU model from the following series of events:
1) takeOverFrom executed to switch from Atomic -> O3
2) All bootUncacheability flags are reset to true
3) Core2 tries to execute a load covered by bootUncacheability, it
is flagged as uncacheable
4) Core2's load needs to replay due to a pipeline flush
3) Core1 core does an action on CPSR
4) The handling code for CPSR then checks all other cores
to determine if bootUncacheability can be set to false
5) Asynchronously set bootUncacheability on all cores to false
6) Core2 replays load previously set as uncacheable and notices
it is now flagged as cacheable, leads to a panic.
This patch implements takeOverFrom() functionality for the ARM TLBs
to preserve flag values when switching from atomic -> detailed.

arch: Create a method to finalize physical addresses
in the TLB

Some architectures (currently only x86) require some fixing-up of
physical addresses after a normal address translation. This is usually
to remap devices such as the APIC, but could be used for other memory
mapped devices as well. When running the CPU in a using hardware
virtualization, we still need to do these address fix-ups before
inserting the request into the memory system. This patch moves this
patch allows that code to be used by such CPUs without doing full
address translations.

CheckerCPU: Add function stubs to non-ARM ISA source to compile with CheckerCPU

Making the CheckerCPU a runtime time option requires the code to be compatible
with ISAs other than ARM. This patch adds the appropriate function
stubs to allow compilation.

clang: Enable compiling gem5 using clang 2.9 and 3.0

This patch adds the necessary flags to the SConstruct and SConscript
files for compiling using clang 2.9 and later (on Ubuntu et al and OSX
XCode 4.2), and also cleans up a bunch of compiler warnings found by
clang. Most of the warnings are related to hidden virtual functions,
comparisons with unsigneds >= 0, and if-statements with empty
bodies. A number of mismatches between struct and class are also
fixed. clang 2.8 is not working as it has problems with class names
that occur in multiple namespaces (e.g. Statistics in
kernel_stats.hh).

clang has a bug (http://llvm.org/bugs/show_bug.cgi?id=7247) which
causes confusion between the container std::set and the function
Packet::set, and this is currently addressed by not including the
entire namespace std, but rather selecting e.g. "using std::vector" in
the appropriate places.

Fault: Rename sim/fault.hh to fault_fwd.hh to distinguish it from faults.hh.

Faults: Pass the StaticInst involved, if any, to a Fault's invoke method.

Also move the "Fault" reference counted pointer type into a separate file,
sim/fault.hh. It would be better to name this less similarly to sim/faults.hh
to reduce confusion, but fault.hh matches the name of the type. We could change
Fault to FaultPtr to match other pointer types, and then changing the name of
the file would make more sense.

tlb: More fixing of unified TLB

tlb: Don't separate the TLB classes into an instruction TLB and a data TLB

stats: Fix all stats usages to deal with template fixes

CPU: Implement translateTiming which defers to translateAtomic, and convert the timing simple CPU to use it.

ISA: Replace the translate functions in the TLBs with translateAtomic.

style: Make a style pass over the whole arch/alpha directory.

alpha: Clean up namespace usage.

alpha: Get rid fo the namespace called EV5.
We're never going to do an alpha platform other than the one we've got.

Return an UnimpFault for an ITB translation of an uncachable address. We don't support fetching from uncached addresses in Alpha and it means that a speculative fetch can clobber device registers.

TLB: Make a TLB base class and put a virtual demapPage function in it.

params: Deprecate old-style constructors; update most SimObject constructors.

SimObjects not yet updated:
- Process and subclasses
- BaseCPU and subclasses

The SimObject(const std::string &name) constructor was removed. Subclasses
that still rely on that behavior must call the parent initializer as
: SimObject(makeParams(name))

Address translation: Make the page table more flexible.
The page table now stores actual page table entries. It is still a templated
class here, but this will be corrected in the near future.

alpha: Quick fix for things related to TLB MRU cache.
simple-timing test for ALPHA_FS breaks.

Alpha: Fix an off by one error with the tlb caching mechanism.

alpha: Implement a cache for recently used page table entries

Put the Alpha tlb stuff into the AlphaISA namespace, and give the classes more neutral names.

Fixed ALPHA_FS by moving the remnants of isa_fullsys_traits.hh into arch/alpha/pagetable.hh and fixing up some includes

Change ExecContext to ThreadContext. This is being renamed to differentiate between the interface used objects outside of the CPU, and the interface used by the ISA. ThreadContext is used by objects outside of the CPU and is specifically defined in thread_context.hh. ExecContext is more implicit, and is defined by files such as base_dyn_inst.hh or cpu/simple/base.hh.

Further renames/reorganization will be coming shortly; what is currently CPUExecContext (the old ExecContext from m5) will be renamed to SimpleThread or something similar.

src/arch/alpha/arguments.cc:
src/arch/alpha/arguments.hh:
src/arch/alpha/ev5.cc:
src/arch/alpha/faults.cc:
src/arch/alpha/faults.hh:
src/arch/alpha/freebsd/system.cc:
src/arch/alpha/freebsd/system.hh:
src/arch/alpha/isa/branch.isa:
src/arch/alpha/isa/decoder.isa:
src/arch/alpha/isa/main.isa:
src/arch/alpha/linux/process.cc:
src/arch/alpha/linux/system.cc:
src/arch/alpha/linux/system.hh:
src/arch/alpha/linux/threadinfo.hh:
src/arch/alpha/process.cc:
src/arch/alpha/regfile.hh:
src/arch/alpha/stacktrace.cc:
src/arch/alpha/stacktrace.hh:
src/arch/alpha/tlb.cc:
src/arch/alpha/tlb.hh:
src/arch/alpha/tru64/process.cc:
src/arch/alpha/tru64/system.cc:
src/arch/alpha/tru64/system.hh:
src/arch/alpha/utility.hh:
src/arch/alpha/vtophys.cc:
src/arch/alpha/vtophys.hh:
src/arch/mips/faults.cc:
src/arch/mips/faults.hh:
src/arch/mips/isa_traits.cc:
src/arch/mips/isa_traits.hh:
src/arch/mips/linux/process.cc:
src/arch/mips/process.cc:
src/arch/mips/regfile/float_regfile.hh:
src/arch/mips/regfile/int_regfile.hh:
src/arch/mips/regfile/misc_regfile.hh:
src/arch/mips/regfile/regfile.hh:
src/arch/mips/stacktrace.hh:
src/arch/sparc/faults.cc:
src/arch/sparc/faults.hh:
src/arch/sparc/isa_traits.hh:
src/arch/sparc/linux/process.cc:
src/arch/sparc/linux/process.hh:
src/arch/sparc/process.cc:
src/arch/sparc/regfile.hh:
src/arch/sparc/solaris/process.cc:
src/arch/sparc/stacktrace.hh:
src/arch/sparc/ua2005.cc:
src/arch/sparc/utility.hh:
src/arch/sparc/vtophys.cc:
src/arch/sparc/vtophys.hh:
src/base/remote_gdb.cc:
src/base/remote_gdb.hh:
src/cpu/base.cc:
src/cpu/base.hh:
src/cpu/base_dyn_inst.hh:
src/cpu/checker/cpu.cc:
src/cpu/checker/cpu.hh:
src/cpu/checker/exec_context.hh:
src/cpu/cpu_exec_context.cc:
src/cpu/cpu_exec_context.hh:
src/cpu/cpuevent.cc:
src/cpu/cpuevent.hh:
src/cpu/exetrace.hh:
src/cpu/intr_control.cc:
src/cpu/memtest/memtest.hh:
src/cpu/o3/alpha_cpu.hh:
src/cpu/o3/alpha_cpu_impl.hh:
src/cpu/o3/alpha_dyn_inst_impl.hh:
src/cpu/o3/commit.hh:
src/cpu/o3/commit_impl.hh:
src/cpu/o3/cpu.cc:
src/cpu/o3/cpu.hh:
src/cpu/o3/fetch_impl.hh:
src/cpu/o3/regfile.hh:
src/cpu/o3/thread_state.hh:
src/cpu/ozone/back_end.hh:
src/cpu/ozone/cpu.hh:
src/cpu/ozone/cpu_impl.hh:
src/cpu/ozone/front_end.hh:
src/cpu/ozone/front_end_impl.hh:
src/cpu/ozone/inorder_back_end.hh:
src/cpu/ozone/lw_back_end.hh:
src/cpu/ozone/lw_back_end_impl.hh:
src/cpu/ozone/lw_lsq.hh:
src/cpu/ozone/lw_lsq_impl.hh:
src/cpu/ozone/thread_state.hh:
src/cpu/pc_event.cc:
src/cpu/pc_event.hh:
src/cpu/profile.cc:
src/cpu/profile.hh:
src/cpu/quiesce_event.cc:
src/cpu/quiesce_event.hh:
src/cpu/simple/atomic.cc:
src/cpu/simple/base.cc:
src/cpu/simple/base.hh:
src/cpu/simple/timing.cc:
src/cpu/static_inst.cc:
src/cpu/static_inst.hh:
src/cpu/thread_state.hh:
src/dev/alpha_console.cc:
src/dev/ns_gige.cc:
src/dev/sinic.cc:
src/dev/tsunami_cchip.cc:
src/kern/kernel_stats.cc:
src/kern/kernel_stats.hh:
src/kern/linux/events.cc:
src/kern/linux/events.hh:
src/kern/system_events.cc:
src/kern/system_events.hh:
src/kern/tru64/dump_mbuf.cc:
src/kern/tru64/tru64.hh:
src/kern/tru64/tru64_events.cc:
src/kern/tru64/tru64_events.hh:
src/mem/vport.cc:
src/mem/vport.hh:
src/sim/faults.cc:
src/sim/faults.hh:
src/sim/process.cc:
src/sim/process.hh:
src/sim/pseudo_inst.cc:
src/sim/pseudo_inst.hh:
src/sim/syscall_emul.cc:
src/sim/syscall_emul.hh:
src/sim/system.cc:
src/cpu/thread_context.hh:
src/sim/system.hh:
src/sim/vptr.hh:
Change ExecContext to ThreadContext.

Updated Authors from bk prs info

New directory structure:
- simulator source now in 'src' subdirectory
- imported files from 'ext' repository
- support building in arbitrary places, including
outside of the source tree. See comment at top
of SConstruct file for more details.
Regression tests are temporarily disabled; that
syetem needs more extensive revisions.

SConstruct:
Update for new directory structure.
Modify to support build trees that are not subdirectories
of the source tree. See comment at top of file for
more details.
Regression tests are temporarily disabled.
src/arch/SConscript:
src/arch/isa_parser.py:
src/python/SConscript:
Update for new directory structure.