cpu, mem: Changing AtomicOpFunctor* for unique_ptr<AtomicOpFunctor>

This change is based on modify the way we move the AtomicOpFunctor*
through gem5 in order to mantain proper ownership of the object and
ensuring its destruction when it is no longer used.

Doing that we fix at the same time a memory leak in Request.hh
where we were assigning a new AtomicOpFunctor* without destroying the
previous one.

This change creates a new type AtomicOpFunctor_ptr as a
std::unique_ptr<AtomicOpFunctor> and move its ownership as needed. Except
for its only usage when AtomicOpFunc() is called.

Change-Id: Ic516f9d8217cb1ae1f0a19500e5da0336da9fd4f
Reviewed-on: https://gem5-review.googlesource.com/c/public/gem5/+/20919
Reviewed-by: Andreas Sandberg <andreas.sandberg@arm.com>
Maintainer: Andreas Sandberg <andreas.sandberg@arm.com>
Tested-by: kokoro <noreply+kokoro@google.com>

arch: Explicitly specify the endianness in the generic mem helpers.

This avoids using the accessors which automatically assume an
endianness, requiring the memory system to know what the guest ISA is.

Change-Id: I863fa4116f00e77b801a2f8ea2fbe34e7f55fd5f
Reviewed-on: https://gem5-review.googlesource.com/c/13461
Reviewed-by: Andreas Sandberg <andreas.sandberg@arm.com>
Maintainer: Andreas Sandberg <andreas.sandberg@arm.com>

arch: support issuing Atomic Mem Operation (AMO) requests

This patch adds two new functions named amoMemAtomic used in Atomic CPU
model and initiateMemAMO used in Timing CPU models to issue AMO requests
to the memory system.

Change-Id: I962bdc0e5f25b72c170d96ebc136f29a2b230d5e
Reviewed-on: https://gem5-review.googlesource.com/8186
Reviewed-by: Anthony Gutierrez <anthony.gutierrez@amd.com>
Reviewed-by: Jason Lowe-Power <jason@lowepower.com>
Maintainer: Anthony Gutierrez <anthony.gutierrez@amd.com>

arm,sparc,x86,base,cpu,sim: Replace the Twin(32|64)_t types with.

Replace them with std::array<>s.

Change-Id: I76624c87a1cd9b21c386a96147a18de92b8a8a34
Reviewed-on: https://gem5-review.googlesource.com/6602
Maintainer: Gabe Black <gabeblack@google.com>
Reviewed-by: Andreas Sandberg <andreas.sandberg@arm.com>
Reviewed-by: Jason Lowe-Power <jason@lowepower.com>

arch: Include generated decoder header after normal headers

The generated decoder header defines macros that represent bit fields
within instructions. These fields typically have short names that
conflict with names in other header files. Include the generated
header after all normal header to avoid this issue.

Change-Id: I53d149b75432c20abdbf651e32c3c785d897973b
Signed-off-by: Andreas Sandberg <andreas.sandberg@arm.com>
Reviewed-by: Curtis Dunham <curtis.dunham@arm.com>
Reviewed-by: Jason Lowe-Power <jason@lowepower.com>

cpu, arch: fix the type used for the request flags

Change-Id: I183b9942929c873c3272ce6d1abd4ebc472c7132
Reviewed-by: Andreas Sandberg <andreas.sandberg@arm.com>

cpu. arch: add initiateMemRead() to ExecContext interface

For historical reasons, the ExecContext interface had a single
function, readMem(), that did two different things depending on
whether the ExecContext supported atomic memory mode (i.e.,
AtomicSimpleCPU) or timing memory mode (all the other models).
In the former case, it actually performed a memory read; in the
latter case, it merely initiated a read access, and the read
completion did not happen until later when a response packet
arrived from the memory system.

This led to some confusing things, including timing accesses
being required to provide a pointer for the return data even
though that pointer was only used in atomic mode.

This patch splits this interface, adding a new initiateMemRead()
function to the ExecContext interface to replace the timing-mode
use of readMem().

For consistency and clarity, the readMemTiming() helper function
in the ISA definitions is renamed to initiateMemRead() as well.
For x86, where the access size is passed in explicitly, we can
also get rid of the data parameter at this level. For other ISAs,
where the access size is determined from the type of the data
parameter, we have to keep the parameter for that purpose.

arch: don't call *Timing functions from *Atomic versions

The readMemAtomic/writeMemAtomic helper functions were calling
readMemTiming/writeMemTiming respectively. This is functionally
correct, since the *Timing functions are doing the same access
initiation operation as the *Atomic functions (just that the
*Atomic versions also complete the access in line). It also
provides for some (very minimal) code reuse. Unfortunately,
it's potentially pretty confusing, since it makes it look like
the atomic accesses are somehow being converted to timing
accesses. It also gets in the way of specializing the timing
interface (as will be done in a future patch).

arch: Use shared_ptr for all Faults

This patch takes quite a large step in transitioning from the ad-hoc
RefCountingPtr to the c++11 shared_ptr by adopting its use for all
Faults. There are no changes in behaviour, and the code modifications
are mostly just replacing "new" with "make_shared".

mem: Remove explict cast from memhelper.

Previously we were casting the result type to the the memory type which
is incorrect for things like dual-memory operations which still return a
single result.

clang: Enable compiling gem5 using clang 2.9 and 3.0

This patch adds the necessary flags to the SConstruct and SConscript
files for compiling using clang 2.9 and later (on Ubuntu et al and OSX
XCode 4.2), and also cleans up a bunch of compiler warnings found by
clang. Most of the warnings are related to hidden virtual functions,
comparisons with unsigneds >= 0, and if-statements with empty
bodies. A number of mismatches between struct and class are also
fixed. clang 2.8 is not working as it has problems with class names
that occur in multiple namespaces (e.g. Statistics in
kernel_stats.hh).

clang has a bug (http://llvm.org/bugs/show_bug.cgi?id=7247) which
causes confusion between the container std::set and the function
Packet::set, and this is currently addressed by not including the
entire namespace std, but rather selecting e.g. "using std::vector" in
the appropriate places.

ExecContext: Rename the readBytes/writeBytes functions to readMem and writeMem.

readBytes and writeBytes had the word "bytes" in their names because they
accessed blobs of bytes. This distinguished them from the read and write
functions which handled higher level data types. Because those functions don't
exist any more, this change renames readBytes and writeBytes to more general
names, readMem and writeMem, which reflect the fact that they are how you read
and write memory. This also makes their names more consistent with the
register reading/writing functions, although those are still read and set for
some reason.

ISA: Use readBytes/writeBytes for all instruction level memory operations.