misc: Rename misc.(hh|cc) to logging.(hh|cc)

These files aren't a collection of miscellaneous stuff, they're the
definition of the Logger interface, and a few utility macros for
calling into that interface (panic, warn, etc.).

Change-Id: I84267ac3f45896a83c0ef027f8f19c5e9a5667d1
Reviewed-on: https://gem5-review.googlesource.com/6226
Reviewed-by: Brandon Potter <Brandon.Potter@amd.com>
Maintainer: Gabe Black <gabeblack@google.com>

style: [patch 1/22] use /r/3648/ to reorganize includes

LSQ: Set store predictor to periodically clear itself as recommended in the storesets paper.

This patch improves performance by as much as 10% on some spec benchmarks.

trace: reimplement the DTRACE function so it doesn't use a vector
At the same time, rename the trace flags to debug flags since they
have broader usage than simply tracing. This means that
--trace-flags is now --debug-flags and --trace-help is now --debug-help

types: add a type for thread IDs and try to use it everywhere

Fixes to get new CPU model working for simple test case. The CPU does not yet support retrying accesses.

src/cpu/base_dyn_inst.cc:
Delete the allocated data in destructor.
src/cpu/base_dyn_inst.hh:
Only copy the addresses if the translation succeeded.
src/cpu/o3/alpha_cpu.hh:
Return actual translating port.
Don't panic on setNextNPC() as it's always called, regardless of the architecture, when the process initializes.
src/cpu/o3/alpha_cpu_impl.hh:
Pass in memobject to the thread state in SE mode.
src/cpu/o3/commit_impl.hh:
Initialize all variables.
src/cpu/o3/decode_impl.hh:
Handle early resolution of branches properly.
src/cpu/o3/fetch.hh:
Switch structure back to requests.
src/cpu/o3/fetch_impl.hh:
Initialize all variables, create/delete requests properly.
src/cpu/o3/lsq_unit.hh:
Include sender state along with the packet. Also include a more generic writeback event that's only used for stores forwarding data to loads.
src/cpu/o3/lsq_unit_impl.hh:
Redo writeback code to support the response path of the memory system.
src/cpu/o3/mem_dep_unit.cc:
src/cpu/o3/mem_dep_unit_impl.hh:
Wrap variables in #ifdefs.
src/cpu/o3/store_set.cc:
Include to get panic() function.
src/cpu/o3/thread_state.hh:
Create with MemObject as well.
src/cpu/thread_state.hh:
Have a translating port in the thread state object.
src/python/m5/objects/AlphaFullCPU.py:
Mem parameter no longer needed.

Merge ktlim@zamp:/z/ktlim2/clean/m5-o3
into zamp.eecs.umich.edu:/z/ktlim2/clean/newmem-merge

src/cpu/checker/o3_cpu_builder.cc:
src/cpu/o3/alpha_cpu.hh:
src/cpu/o3/alpha_cpu_impl.hh:
src/cpu/o3/alpha_dyn_inst_impl.hh:
src/cpu/o3/bpred_unit.cc:
src/cpu/o3/commit.hh:
src/cpu/o3/fetch_impl.hh:
src/cpu/o3/lsq_unit.hh:
src/cpu/o3/lsq_unit_impl.hh:
src/cpu/o3/thread_state.hh:
Hand merge.

Merge ktlim@zizzer:/bk/newmem
into zizzer.eecs.umich.edu:/.automount/zamp/z/ktlim2/clean/newmem

Updated Authors from bk prs info

Merge ktlim@zizzer:/bk/m5
into zamp.eecs.umich.edu:/z/ktlim2/clean/newmem

SConstruct:
src/SConscript:
src/arch/SConscript:
src/arch/alpha/faults.cc:
src/arch/alpha/tlb.cc:
src/base/traceflags.py:
src/cpu/SConscript:
src/cpu/base.cc:
src/cpu/base.hh:
src/cpu/base_dyn_inst.cc:
src/cpu/cpu_exec_context.cc:
src/cpu/cpu_exec_context.hh:
src/cpu/exec_context.hh:
src/cpu/o3/alpha_cpu.hh:
src/cpu/o3/alpha_cpu_impl.hh:
src/cpu/o3/alpha_dyn_inst.hh:
src/cpu/o3/cpu.cc:
src/cpu/o3/cpu.hh:
src/cpu/o3/regfile.hh:
src/cpu/ozone/cpu.hh:
src/cpu/simple/base.cc:
src/cpu/base_dyn_inst.hh:
src/cpu/o3/2bit_local_pred.cc:
src/cpu/o3/2bit_local_pred.hh:
src/cpu/o3/alpha_cpu.cc:
src/cpu/o3/alpha_cpu_builder.cc:
src/cpu/o3/alpha_dyn_inst.cc:
src/cpu/o3/alpha_dyn_inst_impl.hh:
src/cpu/o3/alpha_impl.hh:
src/cpu/o3/alpha_params.hh:
src/cpu/o3/bpred_unit.cc:
src/cpu/o3/bpred_unit.hh:
src/cpu/o3/bpred_unit_impl.hh:
src/cpu/o3/btb.cc:
src/cpu/o3/btb.hh:
src/cpu/o3/comm.hh:
src/cpu/o3/commit.cc:
src/cpu/o3/commit.hh:
src/cpu/o3/commit_impl.hh:
src/cpu/o3/cpu_policy.hh:
src/cpu/o3/decode.cc:
src/cpu/o3/decode.hh:
src/cpu/o3/decode_impl.hh:
src/cpu/o3/fetch.cc:
src/cpu/o3/fetch.hh:
src/cpu/o3/fetch_impl.hh:
src/cpu/o3/free_list.cc:
src/cpu/o3/free_list.hh:
src/cpu/o3/iew.cc:
src/cpu/o3/iew.hh:
src/cpu/o3/iew_impl.hh:
src/cpu/o3/inst_queue.cc:
src/cpu/o3/inst_queue.hh:
src/cpu/o3/inst_queue_impl.hh:
src/cpu/o3/mem_dep_unit.cc:
src/cpu/o3/mem_dep_unit.hh:
src/cpu/o3/mem_dep_unit_impl.hh:
src/cpu/o3/ras.cc:
src/cpu/o3/ras.hh:
src/cpu/o3/rename.cc:
src/cpu/o3/rename.hh:
src/cpu/o3/rename_impl.hh:
src/cpu/o3/rename_map.cc:
src/cpu/o3/rename_map.hh:
src/cpu/o3/rob.cc:
src/cpu/o3/rob.hh:
src/cpu/o3/rob_impl.hh:
src/cpu/o3/sat_counter.cc:
src/cpu/o3/sat_counter.hh:
src/cpu/o3/store_set.cc:
src/cpu/o3/store_set.hh:
src/cpu/o3/tournament_pred.cc:
src/cpu/o3/tournament_pred.hh:
Hand merges.

New directory structure:
- simulator source now in 'src' subdirectory
- imported files from 'ext' repository
- support building in arbitrary places, including
outside of the source tree. See comment at top
of SConstruct file for more details.
Regression tests are temporarily disabled; that
syetem needs more extensive revisions.

SConstruct:
Update for new directory structure.
Modify to support build trees that are not subdirectories
of the source tree. See comment at top of file for
more details.
Regression tests are temporarily disabled.
src/arch/SConscript:
src/arch/isa_parser.py:
src/python/SConscript:
Update for new directory structure.