style: change C/C++ source permissions to noexec

Several files in the repository were tracked with execute permissions
even though the files are just normal C/C++ files (and the one .isa).

Change-Id: I976b096acab4a1fc74c5699ef1f9b222c1e635c2
Reviewed-on: https://gem5-review.googlesource.com/7241
Reviewed-by: Gabe Black <gabeblack@google.com>
Reviewed-by: Nikos Nikoleris <nikos.nikoleris@arm.com>
Reviewed-by: Andreas Sandberg <andreas.sandberg@arm.com>
Maintainer: Andreas Sandberg <andreas.sandberg@arm.com>

alpha,arm,mips,power,riscv,sparc,x86,isa: De-specialize ExecContexts.

The ISA parser used to generate different copies of exec functions
for each exec context class a particular CPU wanted to use. That's
since been changed so that those functions take a pointer to the base
ExecContext, so the code which would generate those extra functions
can be removed, and some functions which used to be templated on an
ExecContext subclass can be untemplated, or minimally less templated.

Now that some functions aren't going to be instantiated multiple times
with different signatures, there are also opportunities to collapse
templates and make many instruction definitions simpler within the
parser. Since those changes will be less mechanical, they're left for
later changes and will probably be done in smaller increments.

Change-Id: I0015307bb02dfb9c60380b56d2a820f12169ebea
Reviewed-on: https://gem5-review.googlesource.com/5381
Reviewed-by: Andreas Sandberg <andreas.sandberg@arm.com>
Maintainer: Andreas Sandberg <andreas.sandberg@arm.com>

arch: Use shared_ptr for all Faults

This patch takes quite a large step in transitioning from the ad-hoc
RefCountingPtr to the c++11 shared_ptr by adopting its use for all
Faults. There are no changes in behaviour, and the code modifications
are mostly just replacing "new" with "make_shared".

arch: teach ISA parser how to split code across files

This patch encompasses several interrelated and interdependent changes
to the ISA generation step. The end goal is to reduce the size of the
generated compilation units for instruction execution and decoding so
that batch compilation can proceed with all CPUs active without
exhausting physical memory.

The ISA parser (src/arch/isa_parser.py) has been improved so that it can
accept 'split [output_type];' directives at the top level of the grammar
and 'split(output_type)' python calls within 'exec {{ ... }}' blocks.
This has the effect of "splitting" the files into smaller compilation
units. I use air-quotes around "splitting" because the files themselves
are not split, but preprocessing directives are inserted to have the same
effect.

Architecturally, the ISA parser has had some changes in how it works.
In general, it emits code sooner. It doesn't generate per-CPU files,
and instead defers to the C preprocessor to create the duplicate copies
for each CPU type. Likewise there are more files emitted and the C
preprocessor does more substitution that used to be done by the ISA parser.

Finally, the build system (SCons) needs to be able to cope with a
dynamic list of source files coming out of the ISA parser. The changes
to the SCons{cript,truct} files support this. In broad strokes, the
targets requested on the command line are hidden from SCons until all
the build dependencies are determined, otherwise it would try, realize
it can't reach the goal, and terminate in failure. Since build steps
(i.e. running the ISA parser) must be taken to determine the file list,
several new build stages have been inserted at the very start of the
build. First, the build dependencies from the ISA parser will be emitted
to arch/$ISA/generated/inc.d, which is then read by a new SCons builder
to finalize the dependencies. (Once inc.d exists, the ISA parser will not
need to be run to complete this step.) Once the dependencies are known,
the 'Environments' are made by the makeEnv() function. This function used
to be called before the build began but now happens during the build.
It is easy to see that this step is quite slow; this is a known issue
and it's important to realize that it was already slow, but there was
no obvious cause to attribute it to since nothing was displayed to the
terminal. Since new steps that used to be performed serially are now in a
potentially-parallel build phase, the pathname handling in the SCons scripts
has been tightened up to deal with chdir() race conditions. In general,
pathnames are computed earlier and more likely to be stored, passed around,
and processed as absolute paths rather than relative paths. In the end,
some of these issues had to be fixed by inserting serializing dependencies
in the build.

Minor note:
For the null ISA, we just provide a dummy inc.d so SCons is never
compelled to try to generate it. While it seems slightly wrong to have
anything in src/arch/*/generated (i.e. a non-generated 'generated' file),
it's by far the simplest solution.

scons: Add warning for missing declarations

This patch enables warnings for missing declarations. To avoid issues
with SWIG-generated code, the warning is only applied to non-SWIG
code.

SE/FS: Use the new FullSystem constant where possible.

MIPS: Get rid of #if style config checks in the ISA description.

MIPS: Format the register index constants like the other ISAs.
Also a few more style fixes.

go back and fix up MIPS copyright headers

Add in files from merge-bare-iron, get them compiling in FS and SE mode

mips import pt. 1

src/arch/mips/SConscript:
"mips import pt.1".