stats: Update 01.hello-2T-smt and 40.perlbmks stats on ARM/Alpha o3-timing.

The following change removed a write to an integer register when completing
a system call. This changed the reference statistics slightly.

commit 073cb266079edddec64ea8cd5169dd2cbef8f812
Author: Brandon Potter <brandon.potter@amd.com>
Date: Mon Feb 27 14:10:02 2017 -0500

syscall_emul: [patch 14/22] adds identifier system calls

Change-Id: I3bee42ab826dd9cbc49aab34340da57caf4f045d
Reviewed-on: https://gem5-review.googlesource.com/2650
Maintainer: Jason Lowe-Power <jason@lowepower.com>
Reviewed-by: Jason Lowe-Power <jason@lowepower.com>

stats: update references

tests: Update SMT tests to correctly configure CPUs

The 01.hello-2T-smt test case for the O3 CPU didn't correctly setup
the number of threads before creating interrupt controllers, which
confused the constructor in BaseCPU. This changeset adds SMT support
to the test configuration infrastructure.