config: Add a BaseSESystem builder for re-use in regressions

This patch extends the existing system builders to also include a
syscall-emulation builder. This builder is deployed in all
syscall-emulation regressions that do not involve Ruby,
i.e. o3-timing, simple-timing and simple-atomic, as well as the
multi-processor regressions o3-timing-mp, simple-timing-mp and
simple-atomic-mp (the latter are only used by SPARC at this point).

The values chosen for the cache sizes match those that were used in
the existing config scripts (despite being on the large
side). Similarly, a mem_class parameter is added to the builder base
class to enable simple-atomic to use SimpleMemory and o3-timing to use
the default DDR3 configuration.

Due to the different order the ports are connected, the bus stats get
shuffled around for the multi-processor regressions. A separate patch
bumps the port indices. Besides this, all behaviour is exactly the
same.

config: Add a system clock command-line option

This patch adds a 'sys_clock' command-line option and use it to assign
clocks to the system during instantiation.

As part of this change, the default clock in the System class is
removed and whenever a system is instantiated a system clock value
must be set. A default value is provided for the command-line option.

The configs and tests are updated accordingly.

Bus: Split the bus into a non-coherent and coherent bus

This patch introduces a class hierarchy of buses, a non-coherent one,
and a coherent one, splitting the existing bus functionality. By doing
so it also enables further specialisation of the two types of buses.

A non-coherent bus connects a number of non-snooping masters and
slaves, and routes the request and response packets based on the
address. The request packets issued by the master connected to a
non-coherent bus could still snoop in caches attached to a coherent
bus, as is the case with the I/O bus and memory bus in most system
configurations. No snoops will, however, reach any master on the
non-coherent bus itself. The non-coherent bus can be used as a
template for modelling PCI, PCIe, and non-coherent AMBA and OCP buses,
and is typically used for the I/O buses.

A coherent bus connects a number of (potentially) snooping masters and
slaves, and routes the request and response packets based on the
address, and also forwards all requests to the snoopers and deals with
the snoop responses. The coherent bus can be used as a template for
modelling QPI, HyperTransport, ACE and coherent OCP buses, and is
typically used for the L1-to-L2 buses and as the main system
interconnect.

The configuration scripts are updated to use a NoncoherentBus for all
peripheral and I/O buses.

A bit of minor tidying up has also been done.

MEM: Enable multiple distributed generalized memories

This patch removes the assumption on having on single instance of
PhysicalMemory, and enables a distributed memory where the individual
memories in the system are each responsible for a single contiguous
address range.

All memories inherit from an AbstractMemory that encompasses the basic
behaviuor of a random access memory, and provides untimed access
methods. What was previously called PhysicalMemory is now
SimpleMemory, and a subclass of AbstractMemory. All future types of
memory controllers should inherit from AbstractMemory.

To enable e.g. the atomic CPU and RubyPort to access the now
distributed memory, the system has a wrapper class, called
PhysicalMemory that is aware of all the memories in the system and
their associated address ranges. This class thus acts as an
infinitely-fast bus and performs address decoding for these "shortcut"
accesses. Each memory can specify that it should not be part of the
global address map (used e.g. by the functional memories by some
testers). Moreover, each memory can be configured to be reported to
the OS configuration table, useful for populating ATAG structures, and
any potential ACPI tables.

Checkpointing support currently assumes that all memories have the
same size and organisation when creating and resuming from the
checkpoint. A future patch will enable a more flexible
re-organisation.

CheckerCPU: Make some basic regression tests for CheckerCPU

Adds regression tests for the CheckerCPU. ARM ISA support
only at this point.