base: Fix race in PollQueue and remove SIGALRM workaround

There is a race between enabling asynchronous IO for a file descriptor
and IO events happening on that descriptor. A SIGIO won't normally be
delivered if an event is pending when asynchronous IO is
enabled. Instead, the signal will be raised the next time there is an
event on the FD. This changeset simulates a SIGIO by setting the
async_io flag when setting up asynchronous IO for an FD. This causes
the main event loop to poll all file descriptors to check for pending
IO. As a consequence of this, the old SIGALRM hack should no longer be
needed and is therefore removed.

style: Remove non-leading tabs everywhere they shouldn't be. Developers should configure their editors to not insert tabs

Factor code out of main.cc and main.i into a bunch of files
so things are organized in a more sensible manner. Take apart
finalInit and expose the individual functions which are now
called from python. Make checkpointing a bit easier to use.

Pass an exception from a python event through the event queue
back into python so we don't just silently ignore those errors

Updated Authors from bk prs info

New directory structure:
- simulator source now in 'src' subdirectory
- imported files from 'ext' repository
- support building in arbitrary places, including
outside of the source tree. See comment at top
of SConstruct file for more details.
Regression tests are temporarily disabled; that
syetem needs more extensive revisions.

SConstruct:
Update for new directory structure.
Modify to support build trees that are not subdirectories
of the source tree. See comment at top of file for
more details.
Regression tests are temporarily disabled.
src/arch/SConscript:
src/arch/isa_parser.py:
src/python/SConscript:
Update for new directory structure.