mem: Move ruby protocols into a directory called ruby_protocol.

Now that the gem5 protocols are split out, it would be nice to put them
in their own protocol directory. It's also confusing to have files
called *_protocol which are not in the protocol directory.

Change-Id: I7475ee111630050a2421816dfd290921baab9f71
Reviewed-on: https://gem5-review.googlesource.com/c/public/gem5/+/20230
Reviewed-by: Gabe Black <gabeblack@google.com>
Reviewed-by: Andreas Sandberg <andreas.sandberg@arm.com>
Reviewed-by: Jason Lowe-Power <jason@lowepower.com>
Maintainer: Gabe Black <gabeblack@google.com>
Tested-by: kokoro <noreply+kokoro@google.com>

mem: Standardize mem folder header guards

Standardize all header guards in the mem directory according to the most
frequent patterns. In general they have the form:
mem: __FOLDER_TREE_FILE_NAME_HH__
ruby: __FOLDER_TREE_FILENAME_HH__

Change-Id: I983853e292deb302becf151bf0e970057dc24774
Reviewed-on: https://gem5-review.googlesource.com/7881
Reviewed-by: Nikos Nikoleris <nikos.nikoleris@arm.com>
Maintainer: Nikos Nikoleris <nikos.nikoleris@arm.com>

ruby: add default ctor for MachineID type

not all uses of MachineID initialize its fields, so here we add a default
ctor.

ruby: move files from ruby/system to ruby/structures

The directory ruby/system is crowded and unorganized. Hence, the files the
hold actual physical structures, are being moved to the directory
ruby/structures. This includes Cache Memory, Directory Memory,
Memory Controller, Wire Buffer, TBE Table, Perfect Cache Memory, Timer Table,
Bank Array.

The directory ruby/systems has the glue code that holds these structures
together.