dev: Rewrite PCI host functionality

The gem5's current PCI host functionality is very ad hoc. The current
implementations require PCI devices to be hooked up to the
configuration space via a separate configuration port. Devices query
the platform to get their config-space address range. Un-mapped parts
of the config space are intercepted using the XBar's default port
mechanism and a magic catch-all device (PciConfigAll).

This changeset redesigns the PCI host functionality to improve code
reuse and make config-space and interrupt mapping more
transparent. Existing platform code has been updated to use the new
PCI host and configured to stay backwards compatible (i.e., no
guest-side visible changes). The current implementation does not
expose any new functionality, but it can easily be extended with
features such as automatic interrupt mapping.

PCI devices now register themselves with a PCI host controller. The
host controller interface is defined in the abstract base class
PciHost. Registration is done by PciHost::registerDevice() which takes
the device, its bus position (bus/dev/func tuple), and its interrupt
pin (INTA-INTC) as a parameter. The registration interface returns a
PciHost::DeviceInterface that the PCI device can use to query memory
mappings and signal interrupts.

The host device manages the entire PCI configuration space. Accesses
to devices decoded into the devices bus position and then forwarded to
the correct device.

Basic PCI host functionality is implemented in the GenericPciHost base
class. Most platforms can use this class as a basic PCI controller. It
provides the following functionality:

* Configurable configuration space decoding. The number of bits
dedicated to a device is a prameter, making it possible to support
both CAM, ECAM, and legacy mappings.

* Basic interrupt mapping using the interruptLine value from a
device's configuration space. This behavior is the same as in the
old implementation. More advanced controllers can override the
interrupt mapping method to dynamically assign host interrupts to
PCI devices.

* Simple (base + addr) remapping from the PCI bus's address space to
physical addresses for PIO, memory, and DMA.

dev: Remove unused system pointer in the Platform base class

The Platform base class contains a pointer to an instance of the
System which is never initialized. This can lead to subtle bugs since
some architecture-specific platform implementations contain their own
system pointer which is normally used. However, if the platform is
accessed through a pointer to its base class, the dangling pointer
will be used instead.

SE/FS: Remove System::platform and Platform::intrFrequency.

In order for a system object to work in SE mode and FS mode, it has to either
always require a platform object even in SE mode, or get rid of the
requirement all together. Making SE mode carry around unnecessary/unused bits
of FS seems less than ideal, so I decided to go with the second option. The
platform pointer in the System class was used for exactly one purpose, a path
for the Alpha Linux system object to get to the real time clock and read its
frequency so that it could short cut the loops_per_jiffy calculation. There
was also a copy and pasted implementation in MIPS, but since it was only there
because it was there in Alpha I still count that as one use.

This change reverses the mechanism that communicates the RTC frequency so that
the Tsunami platform object pushes it up to the AlphaSystem object. This is
slightly less specific than it could be because really only the
AlphaLinuxSystem uses it. Because the intrFrequency function on the Platform
class was no longer necessary (and unimplemented on anything but Alpha) it was
eliminated.

After this change, a platform will need to have a system, but a system won't
have to have a platform.

includes: sort all includes

Includes: Don't include isa_traits.hh and use the TheISA namespace unless really needed.

Devices: Add support for legacy fixed IO locations in BARs.

Rename SimConsole to Terminal since it makes more sense

params: Deprecate old-style constructors; update most SimObject constructors.

SimObjects not yet updated:
- Process and subclasses
- BaseCPU and subclasses

The SimObject(const std::string &name) constructor was removed. Subclasses
that still rely on that behavior must call the parent initializer as
: SimObject(makeParams(name))

Make mulitple consoles work and be distinguishable from each other

src/dev/alpha/tsunamireg.h:
get rid of things that aren't really tsunami registers
src/dev/platform.hh:
src/dev/uart.cc:
the uart pointer isn't used anymore
src/dev/simconsole.cc:
make the simconsole print something more useful to distinguish between various consoles in a single system
src/dev/uart8250.hh:
put the needed uart defines in here rather than including them from tsunamireg
src/python/m5/objects/T1000.py:
add a console to the T1000 config for the hypervisor

Add default responder to bus
Update configuration for new default responder on bus
Update to devices to handle their own pci config space without pciconfigall
Remove most of pciconfigall, it now is a dumbdevice which gets it's address based on the bus it's supposed to respond for
Remove need for pci config space from platform, add registerPciDevice function to prevent more than one device from having same
bus:dev:func and interrupt
Remove pciconfigspace from pci devices, and py files
Add calcConfigAddr that returns address for config space based on bus/dev/function + offset

configs/test/fs.py:
Update configuration for new default responder on bus
src/dev/ide_ctrl.cc:
src/dev/ide_ctrl.hh:
src/dev/ns_gige.cc:
src/dev/ns_gige.hh:
src/dev/pcidev.cc:
src/dev/pcidev.hh:
Update to handle it's own pci config space without pciconfigall
src/dev/io_device.cc:
src/dev/io_device.hh:
change naming for pio port
break out recvTiming into two functions to reuse code
src/dev/pciconfigall.cc:
src/dev/pciconfigall.hh:
removing most of pciconfigall, it now is a dumbdevice which gets it's address based on the bus it's supposed to respond for
src/dev/pcireg.h:
add a max size for PCI config space (per PCI spec)
src/dev/platform.cc:
src/dev/platform.hh:
remove need for pci config space from platform, add registerPciDevice function to prevent more than one device from having same
bus:dev:func and interrupt
src/dev/sinic.cc:
remove pciconfigspace as it's no longer a needed parameter
src/dev/tsunami.cc:
src/dev/tsunami.hh:
src/dev/tsunami_pchip.cc:
src/dev/tsunami_pchip.hh:
add calcConfigAddr that returns address for config space based on bus/dev/function + offset (per PCI spec)
src/mem/bus.cc:
src/mem/bus.hh:
src/python/m5/objects/Bus.py:
add idea of default responder to bus
src/python/m5/objects/Pci.py:
add config port for pci devices
add latency, bus and size parameters for pci config all (min is 8MB, max is 256MB see pci spec)

Add myself to list of authors

Updated Authors from bk prs info

New directory structure:
- simulator source now in 'src' subdirectory
- imported files from 'ext' repository
- support building in arbitrary places, including
outside of the source tree. See comment at top
of SConstruct file for more details.
Regression tests are temporarily disabled; that
syetem needs more extensive revisions.

SConstruct:
Update for new directory structure.
Modify to support build trees that are not subdirectories
of the source tree. See comment at top of file for
more details.
Regression tests are temporarily disabled.
src/arch/SConscript:
src/arch/isa_parser.py:
src/python/SConscript:
Update for new directory structure.