style: [patch 1/22] use /r/3648/ to reorganize includes

cpu: add a condition-code register class

Add a third register class for condition codes,
in parallel with the integer and FP classes.
No ISAs use the CC class at this point though.

cpu/o3: clean up rename map and free list

Restructured rename map and free list to clean up some
extraneous code and separate out common code that can
be reused across different register classes (int and fp
at this point). Both components now consist of a set
of Simple* objects that are stand-alone rename map &
free list for each class, plus a Unified* object that
presents a unified interface across all register
classes and then redirects accesses to the appropriate
Simple* object as needed.

Moved free list initialization to PhysRegFile to better
isolate knowledge of physical register index mappings
to that class (and remove the need to pass a number
of parameters to the free list constructor).

Causes a small change to these stats:
cpu.rename.int_rename_lookups
cpu.rename.fp_rename_lookups
because they are now categorized on a per-operand basis
rather than a per-instruction basis.
That is, an instruction with mixed fp/int/misc operand
types will have each operand categorized independently,
where previously the lookup was categorized based on
the instruction type.

trace: reimplement the DTRACE function so it doesn't use a vector
At the same time, rename the trace flags to debug flags since they
have broader usage than simply tracing. This means that
--trace-flags is now --debug-flags and --trace-help is now --debug-help

includes: sort all includes

types: add a type for thread IDs and try to use it everywhere

Merge ktlim@zizzer:/bk/newmem
into zizzer.eecs.umich.edu:/.automount/zamp/z/ktlim2/clean/newmem

Updated Authors from bk prs info

Merge ktlim@zizzer:/bk/m5
into zamp.eecs.umich.edu:/z/ktlim2/clean/newmem

SConstruct:
src/SConscript:
src/arch/SConscript:
src/arch/alpha/faults.cc:
src/arch/alpha/tlb.cc:
src/base/traceflags.py:
src/cpu/SConscript:
src/cpu/base.cc:
src/cpu/base.hh:
src/cpu/base_dyn_inst.cc:
src/cpu/cpu_exec_context.cc:
src/cpu/cpu_exec_context.hh:
src/cpu/exec_context.hh:
src/cpu/o3/alpha_cpu.hh:
src/cpu/o3/alpha_cpu_impl.hh:
src/cpu/o3/alpha_dyn_inst.hh:
src/cpu/o3/cpu.cc:
src/cpu/o3/cpu.hh:
src/cpu/o3/regfile.hh:
src/cpu/ozone/cpu.hh:
src/cpu/simple/base.cc:
src/cpu/base_dyn_inst.hh:
src/cpu/o3/2bit_local_pred.cc:
src/cpu/o3/2bit_local_pred.hh:
src/cpu/o3/alpha_cpu.cc:
src/cpu/o3/alpha_cpu_builder.cc:
src/cpu/o3/alpha_dyn_inst.cc:
src/cpu/o3/alpha_dyn_inst_impl.hh:
src/cpu/o3/alpha_impl.hh:
src/cpu/o3/alpha_params.hh:
src/cpu/o3/bpred_unit.cc:
src/cpu/o3/bpred_unit.hh:
src/cpu/o3/bpred_unit_impl.hh:
src/cpu/o3/btb.cc:
src/cpu/o3/btb.hh:
src/cpu/o3/comm.hh:
src/cpu/o3/commit.cc:
src/cpu/o3/commit.hh:
src/cpu/o3/commit_impl.hh:
src/cpu/o3/cpu_policy.hh:
src/cpu/o3/decode.cc:
src/cpu/o3/decode.hh:
src/cpu/o3/decode_impl.hh:
src/cpu/o3/fetch.cc:
src/cpu/o3/fetch.hh:
src/cpu/o3/fetch_impl.hh:
src/cpu/o3/free_list.cc:
src/cpu/o3/free_list.hh:
src/cpu/o3/iew.cc:
src/cpu/o3/iew.hh:
src/cpu/o3/iew_impl.hh:
src/cpu/o3/inst_queue.cc:
src/cpu/o3/inst_queue.hh:
src/cpu/o3/inst_queue_impl.hh:
src/cpu/o3/mem_dep_unit.cc:
src/cpu/o3/mem_dep_unit.hh:
src/cpu/o3/mem_dep_unit_impl.hh:
src/cpu/o3/ras.cc:
src/cpu/o3/ras.hh:
src/cpu/o3/rename.cc:
src/cpu/o3/rename.hh:
src/cpu/o3/rename_impl.hh:
src/cpu/o3/rename_map.cc:
src/cpu/o3/rename_map.hh:
src/cpu/o3/rob.cc:
src/cpu/o3/rob.hh:
src/cpu/o3/rob_impl.hh:
src/cpu/o3/sat_counter.cc:
src/cpu/o3/sat_counter.hh:
src/cpu/o3/store_set.cc:
src/cpu/o3/store_set.hh:
src/cpu/o3/tournament_pred.cc:
src/cpu/o3/tournament_pred.hh:
Hand merges.

New directory structure:
- simulator source now in 'src' subdirectory
- imported files from 'ext' repository
- support building in arbitrary places, including
outside of the source tree. See comment at top
of SConstruct file for more details.
Regression tests are temporarily disabled; that
syetem needs more extensive revisions.

SConstruct:
Update for new directory structure.
Modify to support build trees that are not subdirectories
of the source tree. See comment at top of file for
more details.
Regression tests are temporarily disabled.
src/arch/SConscript:
src/arch/isa_parser.py:
src/python/SConscript:
Update for new directory structure.