cpu: Fix issue identified by UBSan

cpu: o3: replace issueLatency with bool pipelined

Currently, each op class has a parameter issueLat that denotes the cycles after
which another op of the same class can be issued. As of now, this latency can
either be one cycle (fully pipelined) or same as execution latency of the op
(not at all pipelined). The fact that issueLat is a parameter of type Cycles
makes one believe that it can be set to any value. To avoid the confusion, the
parameter is being renamed as 'pipelined' with type boolean. If set to true,
the op would execute in a fully pipelined fashion. Otherwise, it would execute
in an unpipelined fashion.

Param: Transition to Cycles for relevant parameters

This patch is a first step to using Cycles as a parameter type. The
main affected modules are the CPUs and the Ruby caches. There are
definitely plenty more places that are affected, but this patch serves
as a starting point to making the transition.

An important part of this patch is to actually enable parameters to be
specified as Param.Cycles which involves some changes to params.py.

clang: Enable compiling gem5 using clang 2.9 and 3.0

This patch adds the necessary flags to the SConstruct and SConscript
files for compiling using clang 2.9 and later (on Ubuntu et al and OSX
XCode 4.2), and also cleans up a bunch of compiler warnings found by
clang. Most of the warnings are related to hidden virtual functions,
comparisons with unsigneds >= 0, and if-statements with empty
bodies. A number of mismatches between struct and class are also
fixed. clang 2.8 is not working as it has problems with class names
that occur in multiple namespaces (e.g. Statistics in
kernel_stats.hh).

clang has a bug (http://llvm.org/bugs/show_bug.cgi?id=7247) which
causes confusion between the container std::set and the function
Packet::set, and this is currently addressed by not including the
entire namespace std, but rather selecting e.g. "using std::vector" in
the appropriate places.

includes: sort all includes

params: Deprecate old-style constructors; update most SimObject constructors.

SimObjects not yet updated:
- Process and subclasses
- BaseCPU and subclasses

The SimObject(const std::string &name) constructor was removed. Subclasses
that still rely on that behavior must call the parent initializer as
: SimObject(makeParams(name))

Reorganization to move FuncUnit, FUDesc, and OpDesc out of the encumbered directory and into the normal cpu directory.

src/SConscript:
Split off FuncUnits from old FUPool so I'm not including encumbered code. This was all written by Steve Raasch so it's safe to include in the main tree.
src/cpu/o3/fu_pool.cc:
Include the func unit file that's not in the encumbered directory.