misc: Rename misc.(hh|cc) to logging.(hh|cc)

These files aren't a collection of miscellaneous stuff, they're the
definition of the Logger interface, and a few utility macros for
calling into that interface (panic, warn, etc.).

Change-Id: I84267ac3f45896a83c0ef027f8f19c5e9a5667d1
Reviewed-on: https://gem5-review.googlesource.com/6226
Reviewed-by: Brandon Potter <Brandon.Potter@amd.com>
Maintainer: Gabe Black <gabeblack@google.com>

base: Add const to intmath and be more flexible with typing

This patch ensures the functions can be used on const variables.

Bus: Replace tickNextIdle and inRetry with a state variable

This patch adds a state enum and member variable in the bus, tracking
the bus state, thus eliminating the need for tickNextIdle and inRetry,
and fixing an issue that allowed the bus to be occupied by multiple
packets at once (hopefully it also makes it easier to understand the
code).

The bus, in its current form, uses tickNextIdle and inRetry to keep
track of the state of the bus. However, it only updates tickNextIdle
_after_ forwarding a packet using sendTiming, and the result is that
the bus is still seen as idle, and a module that receives the packet
and starts transmitting new packets in zero time will still see the
bus as idle (and this is done by a number of DMA devices). The issue
can also be seen in isOccupied where the bus calls reschedule on an
event instead of schedule.

This patch addresses the problem by marking the bus as _not_ idle
already by the time we conclude that the bus is not occupied and we
will deal with the packet.

As a result of not allowing multiple packets to occupy the bus, some
regressions have slight changes in their statistics. A separate patch
updates these accordingly.

Further ahead, a follow-on patch will introduce a separate state
variable for request/responses/snoop responses, and thus implement a
split request/response bus with separate flow control for the
different message types (even further ahead it will introduce a
multi-layer bus).

ARM: Add I/O devices for booting linux

includes: sort includes again

types: Move stuff for global types into src/base/types.hh

gcc: Add extra parens to quell warnings.
Even though we're not incorrect about operator precedence, let's add
some parens in some particularly confusing places to placate GCC 4.3
so that we don't have to turn the warning off. Agreed that this is a
bit of a pain for those users who get the order of operations correct,
but it is likely to prevent bugs in certain cases.

Updated Authors from bk prs info

New directory structure:
- simulator source now in 'src' subdirectory
- imported files from 'ext' repository
- support building in arbitrary places, including
outside of the source tree. See comment at top
of SConstruct file for more details.
Regression tests are temporarily disabled; that
syetem needs more extensive revisions.

SConstruct:
Update for new directory structure.
Modify to support build trees that are not subdirectories
of the source tree. See comment at top of file for
more details.
Regression tests are temporarily disabled.
src/arch/SConscript:
src/arch/isa_parser.py:
src/python/SConscript:
Update for new directory structure.