style: [patch 1/22] use /r/3648/ to reorganize includes

scons: Add warning for missing declarations

This patch enables warnings for missing declarations. To avoid issues
with SWIG-generated code, the warning is only applied to non-SWIG
code.

stats: Fix swig wrapping for Tick in stats

Tick was not correctly wrapped for the stats system, and therefore it was not
possible to configure the stats dumping from the python scripts without
defining Ticks as long long. This patch fixes the wrapping of Tick by copying
the typemap of uint64_t to Tick.

Statistics: Add a function to configure periodic stats dumping

This patch adds a function, periodicStatDump(long long period), which will dump
and reset the statistics every period. This function is designed to be called
from the python configuration scripts. This allows the periodic stats dumping to
be configured more easilly at run time.

The period is currently specified as a long long as there are issues passing
Tick into the C++ from the python as they have conflicting definitions. If the
period is less than curTick, the first occurance occurs at curTick. If the
period is set to 0, then the event is descheduled and the stats are not
periodically dumped.

Due to issues when resumung from a checkpoint, the StatDump event must be moved
forward such that it occues AFTER the current tick. As the function is called
from the python, the event is scheduled before the system resumes from the
checkpoint. Therefore, the event is moved using the updateEvents() function.
This is called from simulate.py once the system has resumed from the checkpoint.

NOTE: It should be noted that this is a fairly temporary patch which re-adds the
capability to extract temporal information from the communication monitors. It
should not be used at the same time as anything that relies on dumping the
statistics based on in simulation events i.e. a context switch.

Replace curTick global variable with accessor functions.
This step makes it easy to replace the accessor functions
(which still access a global variable) with ones that access
per-thread curTick values.

stats: rename StatEvent() function to schedStatEvent().
This follows the style rules and is more descriptive.

Make commenting on close namespace brackets consistent.

Ran all the source files through 'perl -pi' with this script:

s|\s*(};?\s*)?/\*\s*(end\s*)?namespace\s*(\S+)\s*\*/(\s*})?|} // namespace $3|;
s|\s*};?\s*//\s*(end\s*)?namespace\s*(\S+)\s*|} // namespace $2\n|;
s|\s*};?\s*//\s*(\S+)\s*namespace\s*|} // namespace $1\n|;

Also did a little manual editing on some of the arch/*/isa_traits.hh files
and src/SConscript.

Get rid of the Statistics and Statreset ParamContexts, and
expose all of the relevant functionality to python. Clean
up the mysql code while we're at it.

Merge ktlim@zamp:./local/clean/o3-merge/m5
into zamp.eecs.umich.edu:/z/ktlim2/clean/o3-merge/newmem

configs/boot/micro_memlat.rcS:
configs/boot/micro_tlblat.rcS:
src/arch/alpha/ev5.cc:
src/arch/alpha/isa/decoder.isa:
src/arch/alpha/isa_traits.hh:
src/cpu/base.cc:
src/cpu/base.hh:
src/cpu/base_dyn_inst.hh:
src/cpu/checker/cpu.hh:
src/cpu/checker/cpu_impl.hh:
src/cpu/o3/alpha/cpu_impl.hh:
src/cpu/o3/alpha/params.hh:
src/cpu/o3/checker_builder.cc:
src/cpu/o3/commit_impl.hh:
src/cpu/o3/cpu.cc:
src/cpu/o3/decode_impl.hh:
src/cpu/o3/fetch_impl.hh:
src/cpu/o3/iew.hh:
src/cpu/o3/iew_impl.hh:
src/cpu/o3/inst_queue.hh:
src/cpu/o3/lsq.hh:
src/cpu/o3/lsq_impl.hh:
src/cpu/o3/lsq_unit.hh:
src/cpu/o3/lsq_unit_impl.hh:
src/cpu/o3/regfile.hh:
src/cpu/o3/rename_impl.hh:
src/cpu/o3/thread_state.hh:
src/cpu/ozone/checker_builder.cc:
src/cpu/ozone/cpu.hh:
src/cpu/ozone/cpu_impl.hh:
src/cpu/ozone/front_end.hh:
src/cpu/ozone/front_end_impl.hh:
src/cpu/ozone/lw_back_end.hh:
src/cpu/ozone/lw_back_end_impl.hh:
src/cpu/ozone/lw_lsq.hh:
src/cpu/ozone/lw_lsq_impl.hh:
src/cpu/ozone/thread_state.hh:
src/cpu/simple/base.cc:
src/cpu/simple_thread.cc:
src/cpu/simple_thread.hh:
src/cpu/thread_state.hh:
src/dev/ide_disk.cc:
src/python/m5/objects/O3CPU.py:
src/python/m5/objects/Root.py:
src/python/m5/objects/System.py:
src/sim/pseudo_inst.cc:
src/sim/pseudo_inst.hh:
src/sim/system.hh:
util/m5/m5.c:
Hand merge.

Updated Authors from bk prs info

New directory structure:
- simulator source now in 'src' subdirectory
- imported files from 'ext' repository
- support building in arbitrary places, including
outside of the source tree. See comment at top
of SConstruct file for more details.
Regression tests are temporarily disabled; that
syetem needs more extensive revisions.

SConstruct:
Update for new directory structure.
Modify to support build trees that are not subdirectories
of the source tree. See comment at top of file for
more details.
Regression tests are temporarily disabled.
src/arch/SConscript:
src/arch/isa_parser.py:
src/python/SConscript:
Update for new directory structure.