mem: Standardize mem folder header guards

Standardize all header guards in the mem directory according to the most
frequent patterns. In general they have the form:
mem: __FOLDER_TREE_FILE_NAME_HH__
ruby: __FOLDER_TREE_FILENAME_HH__

Change-Id: I983853e292deb302becf151bf0e970057dc24774
Reviewed-on: https://gem5-review.googlesource.com/7881
Reviewed-by: Nikos Nikoleris <nikos.nikoleris@arm.com>
Maintainer: Nikos Nikoleris <nikos.nikoleris@arm.com>

ruby: eliminate type uint64 and int64
These types are being replaced with uint64_t and int64_t.

ruby: reverts to changeset: bf82f1f7b040

ruby: eliminate type uint64 and int64

These types are being replaced with uint64_t and int64_t.

ruby: replace Address by Addr
This patch eliminates the type Address defined by the ruby memory system.
This memory system would now use the type Addr that is in use by the
rest of the system.

ruby: remove typedef of Index as int64
The Index type defined as typedef int64 does not really provide any help
since in most places we use primitive types instead of Index. Also, the name
Index is very generic that it does not merit being used as a typename.

ruby: eliminate type Time
There is another type Time in src/base class which results in a conflict.

ruby: add support for clusters

A cluster over here means a set of controllers that can be accessed only by a
certain set of cores. For example, consider a two level hierarchy. Assume
there are 4 L1 controllers (private) and 2 L2 controllers. We can have two
different hierarchies here:

a. the address space is partitioned between the two L2 controllers. Each L1
controller accesses both the L2 controllers. In this case, each L1 controller
is a cluster initself.

b. both the L2 controllers can cache any address. An L1 controller has access
to only one of the L2 controllers. In this case, each L2 controller
along with the L1 controllers that access it, form a cluster.

This patch allows for each controller to have a cluster ID, which is 0 by
default. By setting the cluster ID properly, one can instantiate hierarchies
with clusters. Note that the coherence protocol might have to be changed as
well.

ruby: replace Time with Cycles (final patch in the series)
This patch is as of now the final patch in the series of patches that replace
Time with Cycles.This patch further replaces Time with Cycles in Sequencer,
Profiler, different protocols and related entities.

Though Time has not been completely removed, the places where it is in use
seem benign as of now.

ruby: eliminate typedef integer_t

Ruby: Use uint32_t instead of uint32 everywhere

Ruby: Use uint8_t instead of uint8 everywhere

Ruby: Remove RubyEventQueue
This patch removes RubyEventQueue. Consumer objects now rely on RubySystem
or themselves for scheduling events.

Ruby: Remove some unused typedefs
This patch removes some of the unused typedefs. It also moves
some of the typedefs from Global.hh to TypeDefines.hh. The patch
also eliminates the file NodeID.hh.

Ruby: Remove some unused code

ruby: Fix copyrights on files
Mostly files missed during import or screwed up during import

ruby: Import the latest ruby changes from gems.
This was done with an automated process, so there could be things that were
done in this tree in the past that didn't make it. One known regression
is that atomic memory operations do not seem to work properly anymore.