misc: Rename misc.(hh|cc) to logging.(hh|cc)

These files aren't a collection of miscellaneous stuff, they're the
definition of the Logger interface, and a few utility macros for
calling into that interface (panic, warn, etc.).

Change-Id: I84267ac3f45896a83c0ef027f8f19c5e9a5667d1
Reviewed-on: https://gem5-review.googlesource.com/6226
Reviewed-by: Brandon Potter <Brandon.Potter@amd.com>
Maintainer: Gabe Black <gabeblack@google.com>

style: [patch 1/22] use /r/3648/ to reorganize includes

dev: Rewrite PCI host functionality

The gem5's current PCI host functionality is very ad hoc. The current
implementations require PCI devices to be hooked up to the
configuration space via a separate configuration port. Devices query
the platform to get their config-space address range. Un-mapped parts
of the config space are intercepted using the XBar's default port
mechanism and a magic catch-all device (PciConfigAll).

This changeset redesigns the PCI host functionality to improve code
reuse and make config-space and interrupt mapping more
transparent. Existing platform code has been updated to use the new
PCI host and configured to stay backwards compatible (i.e., no
guest-side visible changes). The current implementation does not
expose any new functionality, but it can easily be extended with
features such as automatic interrupt mapping.

PCI devices now register themselves with a PCI host controller. The
host controller interface is defined in the abstract base class
PciHost. Registration is done by PciHost::registerDevice() which takes
the device, its bus position (bus/dev/func tuple), and its interrupt
pin (INTA-INTC) as a parameter. The registration interface returns a
PciHost::DeviceInterface that the PCI device can use to query memory
mappings and signal interrupts.

The host device manages the entire PCI configuration space. Accesses
to devices decoded into the devices bus position and then forwarded to
the correct device.

Basic PCI host functionality is implemented in the GenericPciHost base
class. Most platforms can use this class as a basic PCI controller. It
provides the following functionality:

* Configurable configuration space decoding. The number of bits
dedicated to a device is a prameter, making it possible to support
both CAM, ECAM, and legacy mappings.

* Basic interrupt mapping using the interruptLine value from a
device's configuration space. This behavior is the same as in the
old implementation. More advanced controllers can override the
interrupt mapping method to dynamically assign host interrupts to
PCI devices.

* Simple (base + addr) remapping from the PCI bus's address space to
physical addresses for PIO, memory, and DMA.

Includes: Don't include isa_traits.hh and use the TheISA namespace unless really needed.

arch: nuke arch/isa_specific.hh and move stuff to generated config/the_isa.hh

params: Deprecate old-style constructors; update most SimObject constructors.

SimObjects not yet updated:
- Process and subclasses
- BaseCPU and subclasses

The SimObject(const std::string &name) constructor was removed. Subclasses
that still rely on that behavior must call the parent initializer as
: SimObject(makeParams(name))

Major changes to how SimObjects are created and initialized. Almost all
creation and initialization now happens in python. Parameter objects
are generated and initialized by python. The .ini file is now solely for
debugging purposes and is not used in construction of the objects in any
way.

make our code a little more standards compliant
pretty close to compiling w/ suns compiler

briefly:
add dummy return after panic()/fatal()
split out flags by compiler vendor
include cstring and cmath where appropriate
use std namespace for string ops

SConstruct:
Add code to detect compiler and choose cflags based on detected compiler
Fix zlib check to work with suncc
src/SConscript:
split out flags by compiler vendor
src/arch/sparc/isa/decoder.isa:
use correct namespace for sqrt
src/arch/sparc/isa/formats/basic.isa:
add dummy return around panic
src/arch/sparc/isa/formats/integerop.isa:
use correct namespace for stringops
src/arch/sparc/isa/includes.isa:
include cstring and cmath where appropriate
src/arch/sparc/isa_traits.hh:
remove dangling comma
src/arch/sparc/system.cc:
dummy return to make sun cc front end happy
src/arch/sparc/tlb.cc:
src/base/compression/lzss_compression.cc:
use std namespace for string ops
src/arch/sparc/utility.hh:
no reason to say something is unsigned unsigned int
src/base/compression/null_compression.hh:
dummy returns to for suncc front end
src/base/cprintf.hh:
use standard variadic argument syntax instead of gnuc specefic renaming
src/base/hashmap.hh:
don't need to define hash for suncc
src/base/hostinfo.cc:
need stdio.h for sprintf
src/base/loader/object_file.cc:
munmap is in std namespace not null
src/base/misc.hh:
use M5 generic noreturn macros
use standard variadic macro __VA_ARGS__
src/base/pollevent.cc:
we need file.h for file flags
src/base/random.cc:
mess with include files to make suncc happy
src/base/remote_gdb.cc:
malloc memory for function instead of having a non-constant in an array size
src/base/statistics.hh:
use std namespace for floor
src/base/stats/text.cc:
include math.h for rint (cmath won't work)
src/base/time.cc:
use suncc version of ctime_r
src/base/time.hh:
change macro to work with both gcc and suncc
src/base/timebuf.hh:
include cstring from memset and use std::
src/base/trace.hh:
change variadic macros to be normal format
src/cpu/SConscript:
add dummy returns where appropriate
src/cpu/activity.cc:
include cstring for memset
src/cpu/exetrace.hh:
include cstring fro memcpy
src/cpu/simple/base.hh:
add dummy return for panic
src/dev/baddev.cc:
src/dev/pciconfigall.cc:
src/dev/platform.cc:
src/dev/sparc/t1000.cc:
add dummy return where appropriate
src/dev/ide_atareg.h:
make define work for both gnuc and suncc
src/dev/io_device.hh:
add dummy returns where approirate
src/dev/pcidev.hh:
src/mem/cache/cache_impl.hh:
src/mem/cache/miss/blocking_buffer.cc:
src/mem/cache/tags/lru.hh:
src/mem/cache/tags/split.hh:
src/mem/cache/tags/split_lifo.hh:
src/mem/cache/tags/split_lru.hh:
src/mem/dram.cc:
src/mem/packet.cc:
src/mem/port.cc:
include cstring for string ops
src/dev/sparc/mm_disk.cc:
add dummy return where appropriate
include cstring for string ops
src/mem/cache/miss/blocking_buffer.hh:
src/mem/port.hh:
Add dummy return where appropriate
src/mem/cache/tags/iic.cc:
cast hastSets to double for log() call
src/mem/physical.cc:
cast pmemAddr to char* for munmap
src/sim/byteswap.hh:
make define work for suncc and gnuc

Fixed ALPHA_FS by moving the remnants of isa_fullsys_traits.hh into arch/alpha/pagetable.hh and fixing up some includes

Add default responder to bus
Update configuration for new default responder on bus
Update to devices to handle their own pci config space without pciconfigall
Remove most of pciconfigall, it now is a dumbdevice which gets it's address based on the bus it's supposed to respond for
Remove need for pci config space from platform, add registerPciDevice function to prevent more than one device from having same
bus:dev:func and interrupt
Remove pciconfigspace from pci devices, and py files
Add calcConfigAddr that returns address for config space based on bus/dev/function + offset

configs/test/fs.py:
Update configuration for new default responder on bus
src/dev/ide_ctrl.cc:
src/dev/ide_ctrl.hh:
src/dev/ns_gige.cc:
src/dev/ns_gige.hh:
src/dev/pcidev.cc:
src/dev/pcidev.hh:
Update to handle it's own pci config space without pciconfigall
src/dev/io_device.cc:
src/dev/io_device.hh:
change naming for pio port
break out recvTiming into two functions to reuse code
src/dev/pciconfigall.cc:
src/dev/pciconfigall.hh:
removing most of pciconfigall, it now is a dumbdevice which gets it's address based on the bus it's supposed to respond for
src/dev/pcireg.h:
add a max size for PCI config space (per PCI spec)
src/dev/platform.cc:
src/dev/platform.hh:
remove need for pci config space from platform, add registerPciDevice function to prevent more than one device from having same
bus:dev:func and interrupt
src/dev/sinic.cc:
remove pciconfigspace as it's no longer a needed parameter
src/dev/tsunami.cc:
src/dev/tsunami.hh:
src/dev/tsunami_pchip.cc:
src/dev/tsunami_pchip.hh:
add calcConfigAddr that returns address for config space based on bus/dev/function + offset (per PCI spec)
src/mem/bus.cc:
src/mem/bus.hh:
src/python/m5/objects/Bus.py:
add idea of default responder to bus
src/python/m5/objects/Pci.py:
add config port for pci devices
add latency, bus and size parameters for pci config all (min is 8MB, max is 256MB see pci spec)

Updated Authors from bk prs info

New directory structure:
- simulator source now in 'src' subdirectory
- imported files from 'ext' repository
- support building in arbitrary places, including
outside of the source tree. See comment at top
of SConstruct file for more details.
Regression tests are temporarily disabled; that
syetem needs more extensive revisions.

SConstruct:
Update for new directory structure.
Modify to support build trees that are not subdirectories
of the source tree. See comment at top of file for
more details.
Regression tests are temporarily disabled.
src/arch/SConscript:
src/arch/isa_parser.py:
src/python/SConscript:
Update for new directory structure.