style: change C/C++ source permissions to noexec

Several files in the repository were tracked with execute permissions
even though the files are just normal C/C++ files (and the one .isa).

Change-Id: I976b096acab4a1fc74c5699ef1f9b222c1e635c2
Reviewed-on: https://gem5-review.googlesource.com/7241
Reviewed-by: Gabe Black <gabeblack@google.com>
Reviewed-by: Nikos Nikoleris <nikos.nikoleris@arm.com>
Reviewed-by: Andreas Sandberg <andreas.sandberg@arm.com>
Maintainer: Andreas Sandberg <andreas.sandberg@arm.com>

includes: sort all includes

O3: Generaize the O3 IMPL class so it isn't split out by ISA.

O3: Generaize the O3 dynamic instruction class so it isn't split out by ISA.

O3: Generalize the O3 CPU object so it isn't split out by ISA.

params: Convert the CPU objects to use the auto generated param structs.
A whole bunch of stuff has been converted to use the new params stuff, but
the CPU wasn't one of them. While we're at it, make some things a bit
more stylish. Most of the work was done by Gabe, I just cleaned stuff up
a bit more at the end.

Initial changes to get O3 working with SPARC

src/arch/sparc/process.cc:
MachineBytes doesn't exist any more.
src/arch/sparc/regfile.cc:
Add in the miscRegFile for good measure.
src/cpu/o3/isa_specific.hh:
Add in a section for SPARC
src/cpu/o3/sparc/cpu.cc:
src/cpu/o3/sparc/cpu.hh:
src/cpu/o3/sparc/cpu_builder.cc:
src/cpu/o3/sparc/cpu_impl.hh:
src/cpu/o3/sparc/dyn_inst.cc:
src/cpu/o3/sparc/dyn_inst.hh:
src/cpu/o3/sparc/dyn_inst_impl.hh:
src/cpu/o3/sparc/impl.hh:
src/cpu/o3/sparc/params.hh:
src/cpu/o3/sparc/thread_context.cc:
src/cpu/o3/sparc/thread_context.hh:
Sparc version of this file.

This changeset gets the MIPS ISA pretty much working in the O3CPU. It builds, runs, and gets very very close to completing the hello world
succesfully but there are some minor quirks to iron out. Who would've known a DELAY SLOT introduces that much complexity?! arrgh!

Anyways, a lot of this stuff had to do with my project at MIPS and me needing to know how I was going to get this working for the MIPS
ISA. So I figured I would try to touch it up and throw it in here (I hate to introduce non-completely working components... )

src/arch/alpha/isa/mem.isa:
spacing
src/arch/mips/faults.cc:
src/arch/mips/faults.hh:
Gabe really authored this
src/arch/mips/isa/decoder.isa:
add StoreConditional Flag to instruction
src/arch/mips/isa/formats/basic.isa:
Steven really did this file
src/arch/mips/isa/formats/branch.isa:
fix bug for uncond/cond control
src/arch/mips/isa/formats/mem.isa:
Adjust O3CPU memory access to use new memory model interface.
src/arch/mips/isa/formats/util.isa:
update LoadStoreBase template
src/arch/mips/isa_traits.cc:
update SERIALIZE partially
src/arch/mips/process.cc:
src/arch/mips/process.hh:
no need for this for NOW. ASID/Virtual addressing handles it
src/arch/mips/regfile/misc_regfile.hh:
add in clear() function and comments for future usage of special misc. regs
src/cpu/base_dyn_inst.hh:
add in nextNPC variable and supporting functions.

add isCondDelaySlot function

Update predTaken and mispredicted functions
src/cpu/base_dyn_inst_impl.hh:
init nextNPC
src/cpu/o3/SConscript:
add MIPS files to compile
src/cpu/o3/alpha/thread_context.hh:
no need for my name on this file
src/cpu/o3/bpred_unit_impl.hh:
Update RAS appropriately for MIPS
src/cpu/o3/comm.hh:
add some extra communication variables to aid in handling the
delay slots
src/cpu/o3/commit.hh:
minor name fix for nextNPC functions.
src/cpu/o3/commit_impl.hh:
src/cpu/o3/decode_impl.hh:
src/cpu/o3/fetch_impl.hh:
src/cpu/o3/iew_impl.hh:
src/cpu/o3/inst_queue_impl.hh:
src/cpu/o3/rename_impl.hh:
Fix necessary variables and functions for squashes with delay slots
src/cpu/o3/cpu.cc:
Update function interface ...

adjust removeInstsNotInROB function to recognize delay slots insts
src/cpu/o3/cpu.hh:
update removeInstsNotInROB
src/cpu/o3/decode.hh:
declare necessary variables for handling delay slot
src/cpu/o3/dyn_inst.hh:
Add in MipsDynInst
src/cpu/o3/fetch.hh:
src/cpu/o3/iew.hh:
src/cpu/o3/rename.hh:
declare necessary variables and adjust functions for handling delay slot
src/cpu/o3/inst_queue.hh:
src/cpu/simple/base.cc:
no need for my name here
src/cpu/o3/isa_specific.hh:
add in MIPS files
src/cpu/o3/scoreboard.hh:
dont include alpha specific isa traits!
src/cpu/o3/thread_context.hh:
no need for my name here, i just rearranged where the file goes
src/cpu/static_inst.hh:
add isCondDelaySlot function
src/cpu/o3/mips/cpu.cc:
src/cpu/o3/mips/cpu.hh:
src/cpu/o3/mips/cpu_builder.cc:
src/cpu/o3/mips/cpu_impl.hh:
src/cpu/o3/mips/dyn_inst.cc:
src/cpu/o3/mips/dyn_inst.hh:
src/cpu/o3/mips/dyn_inst_impl.hh:
src/cpu/o3/mips/impl.hh:
src/cpu/o3/mips/params.hh:
src/cpu/o3/mips/thread_context.cc:
src/cpu/o3/mips/thread_context.hh:
MIPS file for O3CPU...mirrors ALPHA definition

Make O3CPU model independent of the ISA

Use O3CPU when building instead of AlphaO3CPU.

I could use some better python magic in the cpu_models.py file!

AUTHORS:
add middle initial
SConstruct:
change from AlphaO3CPU to O3CPU
src/cpu/SConscript:
edits to build O3CPU instead of AlphaO3CPU
src/cpu/cpu_models.py:
change substitution template to use proper CPU EXEC CONTEXT For O3CPU Model...

Actually, some Python expertise could be used here. The 'env' variable is not
passed to this file, so I had to parse through the ARGV to find the ISA...
src/cpu/o3/base_dyn_inst.cc:
src/cpu/o3/bpred_unit.cc:
src/cpu/o3/commit.cc:
src/cpu/o3/cpu.cc:
src/cpu/o3/cpu.hh:
src/cpu/o3/decode.cc:
src/cpu/o3/fetch.cc:
src/cpu/o3/iew.cc:
src/cpu/o3/inst_queue.cc:
src/cpu/o3/lsq.cc:
src/cpu/o3/lsq_unit.cc:
src/cpu/o3/mem_dep_unit.cc:
src/cpu/o3/rename.cc:
src/cpu/o3/rob.cc:
use isa_specific.hh
src/sim/process.cc:
only initi NextNPC if not ALPHA
src/cpu/o3/alpha/cpu.cc:
alphao3cpu impl
src/cpu/o3/alpha/cpu.hh:
move AlphaTC to it's own file
src/cpu/o3/alpha/cpu_impl.hh:
Move AlphaTC to it's own file ...
src/cpu/o3/alpha/dyn_inst.cc:
src/cpu/o3/alpha/dyn_inst.hh:
src/cpu/o3/alpha/dyn_inst_impl.hh:
include paths
src/cpu/o3/alpha/impl.hh:
include paths, set default MaxThreads to 2 instead of 4
src/cpu/o3/alpha/params.hh:
set Alpha Specific Params here
src/python/m5/objects/O3CPU.py:
add O3CPU class
src/cpu/o3/SConscript:
include isa-specific build files
src/cpu/o3/alpha/thread_context.cc:
NEW HOME of AlphaTC
src/cpu/o3/alpha/thread_context.hh:
new home of AlphaTC
src/cpu/o3/isa_specific.hh:
includes ISA specific files
src/cpu/o3/params.hh:
base o3 params
src/cpu/o3/thread_context.hh:
base o3 thread context
src/cpu/o3/thread_context_impl.hh:
base o3 thead context impl