style: [patch 1/22] use /r/3648/ to reorganize includes

sim: Add a checkpoint function to test for entries

When loading a checkpoint, it's sometimes desirable to be able to test
whether an entry within a secion exists. This is currently done
automatically in the UNSERIALIZE_OPT_SCALAR macro, but it isn't
possible to do for arrays, containers, or enums. Instead of adding
even more macros, add a helper function (CheckpointIn::entryExists())
that tests for the presence of an entry.

Change-Id: I4b4646b03276b889fd3916efefff3bd552317dbc
Signed-off-by: Andreas Sandberg <andreas.sandberg@arm.com>
Reviewed-by: Nikos Nikoleris <nikos.nikoleris@arm.com>

base: Add getSectionNames to IniFile

Add an accessor to IniFile to list all the sections in the file.

scons: Fix up numerous warnings about name shadowing

This patch address the most important name shadowing warnings (as
produced when using gcc/clang with -Wshadow). There are many
locations where constructor parameters and function parameters shadow
local variables, but these are left unchanged.

clang/gcc: Fix compilation issues with clang 3.0 and gcc 4.6

This patch addresses a number of minor issues that cause problems when
compiling with clang >= 3.0 and gcc >= 4.6. Most importantly, it
avoids using the deprecated ext/hash_map and instead uses
unordered_map (and similarly so for the hash_set). To make use of the
new STL containers, g++ and clang has to be invoked with "-std=c++0x",
and this is now added for all gcc versions >= 4.6, and for clang >=
3.0. For gcc >= 4.3 and <= 4.5 and clang <= 3.0 we use the tr1
unordered_map to avoid the deprecation warning.

The addition of c++0x in turn causes a few problems, as the
compiler is more stringent and adds a number of new warnings. Below,
the most important issues are enumerated:

1) the use of namespaces is more strict, e.g. for isnan, and all
headers opening the entire namespace std are now fixed.

2) another other issue caused by the more stringent compiler is the
narrowing of the embedded python, which used to be a char array,
and is now unsigned char since there were values larger than 128.

3) a particularly odd issue that arose with the new c++0x behaviour is
found in range.hh, where the operator< causes gcc to complain about
the template type parsing (the "<" is interpreted as the beginning
of a template argument), and the problem seems to be related to the
begin/end members introduced for the range-type iteration, which is
a new feature in c++11.

As a minor update, this patch also fixes the build flags for the clang
debug target that used to be shared with gcc and incorrectly use
"-ggdb".

includes: sort all includes

inifile: Whack preprocessor access.
We haven't used the preprocessor feature of the inifile stuff in a
very long time, so let's get rid of it since it would otherwise take
effort to maintain.

String constant const-ness changes to placate g++ 4.2.
Also some bug fixes in MIPS ISA uncovered by g++ warnings
(Python string compares don't work in C++!).

Updated Authors from bk prs info

New directory structure:
- simulator source now in 'src' subdirectory
- imported files from 'ext' repository
- support building in arbitrary places, including
outside of the source tree. See comment at top
of SConstruct file for more details.
Regression tests are temporarily disabled; that
syetem needs more extensive revisions.

SConstruct:
Update for new directory structure.
Modify to support build trees that are not subdirectories
of the source tree. See comment at top of file for
more details.
Regression tests are temporarily disabled.
src/arch/SConscript:
src/arch/isa_parser.py:
src/python/SConscript:
Update for new directory structure.