misc: Rename misc.(hh|cc) to logging.(hh|cc)

These files aren't a collection of miscellaneous stuff, they're the
definition of the Logger interface, and a few utility macros for
calling into that interface (panic, warn, etc.).

Change-Id: I84267ac3f45896a83c0ef027f8f19c5e9a5667d1
Reviewed-on: https://gem5-review.googlesource.com/6226
Reviewed-by: Brandon Potter <Brandon.Potter@amd.com>
Maintainer: Gabe Black <gabeblack@google.com>

style: [patch 1/22] use /r/3648/ to reorganize includes

base: remove Trace::enabled flag

The DTRACE() macro tests both Trace::enabled and the specific flag. This
change uses the same administrative interface for enabling/disabling
tracing, but masks the SimpleFlags settings directly. This eliminates a
load for every DTRACE() test, e.g. DPRINTF.

scons: Add warning for missing declarations

This patch enables warnings for missing declarations. To avoid issues
with SWIG-generated code, the warning is only applied to non-SWIG
code.

debug: fix AllFlags::disable()

Looks like copy-and-paste bug, apparently I'm the first
person to ever use this since it's plainly broken.

debug: fix help output

trace: reimplement the DTRACE function so it doesn't use a vector
At the same time, rename the trace flags to debug flags since they
have broader usage than simply tracing. This means that
--trace-flags is now --debug-flags and --trace-help is now --debug-help

debug: create a Debug namespace

includes: sort all includes

debug: Move debug_break into src/base