send.py revision 1948
11376Sbinkertn@umich.edu#!/usr/bin/env python
21376Sbinkertn@umich.edu# Copyright (c) 2005 The Regents of The University of Michigan
31376Sbinkertn@umich.edu# All rights reserved.
41376Sbinkertn@umich.edu#
51376Sbinkertn@umich.edu# Redistribution and use in source and binary forms, with or without
61376Sbinkertn@umich.edu# modification, are permitted provided that the following conditions are
71376Sbinkertn@umich.edu# met: redistributions of source code must retain the above copyright
81376Sbinkertn@umich.edu# notice, this list of conditions and the following disclaimer;
91376Sbinkertn@umich.edu# redistributions in binary form must reproduce the above copyright
101376Sbinkertn@umich.edu# notice, this list of conditions and the following disclaimer in the
111376Sbinkertn@umich.edu# documentation and/or other materials provided with the distribution;
121376Sbinkertn@umich.edu# neither the name of the copyright holders nor the names of its
131376Sbinkertn@umich.edu# contributors may be used to endorse or promote products derived from
141376Sbinkertn@umich.edu# this software without specific prior written permission.
151376Sbinkertn@umich.edu#
161376Sbinkertn@umich.edu# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
171376Sbinkertn@umich.edu# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
181376Sbinkertn@umich.edu# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
191376Sbinkertn@umich.edu# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
201376Sbinkertn@umich.edu# OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
211376Sbinkertn@umich.edu# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
221376Sbinkertn@umich.edu# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
231376Sbinkertn@umich.edu# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
241376Sbinkertn@umich.edu# THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
251376Sbinkertn@umich.edu# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
261376Sbinkertn@umich.edu# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
271376Sbinkertn@umich.edu#
281376Sbinkertn@umich.edu# Authors: Ali Saidi
291376Sbinkertn@umich.edu#          Nathan Binkert
301376Sbinkertn@umich.edu
311385Sbinkertn@umich.eduimport os, os.path, re, socket, sys
321376Sbinkertn@umich.edufrom os import environ as env, listdir
331816Sbinkertn@umich.edufrom os.path import basename, isdir, isfile, islink, join as joinpath, normpath
341376Sbinkertn@umich.edufrom filecmp import cmp as filecmp
351816Sbinkertn@umich.edufrom shutil import copy
361376Sbinkertn@umich.edu
371385Sbinkertn@umich.edudef nfspath(dir):
381385Sbinkertn@umich.edu    if dir.startswith('/.automount/'):
391385Sbinkertn@umich.edu        dir = '/n/%s' % dir[12:]
401385Sbinkertn@umich.edu    elif not dir.startswith('/n/'):
411385Sbinkertn@umich.edu        dir = '/n/%s%s' % (socket.gethostname().split('.')[0], dir)
421385Sbinkertn@umich.edu    return dir
431385Sbinkertn@umich.edu
441816Sbinkertn@umich.edudef syncdir(srcdir, destdir):
451816Sbinkertn@umich.edu    srcdir = normpath(srcdir)
461816Sbinkertn@umich.edu    destdir = normpath(destdir)
471816Sbinkertn@umich.edu    if not isdir(destdir):
481816Sbinkertn@umich.edu        sys.exit('destination directory "%s" does not exist' % destdir)
491816Sbinkertn@umich.edu
501816Sbinkertn@umich.edu    for root, dirs, files in os.walk(srcdir):
511816Sbinkertn@umich.edu        root = normpath(root)
521816Sbinkertn@umich.edu        prefix = os.path.commonprefix([root, srcdir])
531816Sbinkertn@umich.edu        root = root[len(prefix):]
541816Sbinkertn@umich.edu        if root.startswith('/'):
551816Sbinkertn@umich.edu            root = root[1:]
561816Sbinkertn@umich.edu        for rem in [ d for d in dirs if d.startswith('.') or d == 'SCCS']:
571816Sbinkertn@umich.edu            dirs.remove(rem)
581816Sbinkertn@umich.edu
591816Sbinkertn@umich.edu        for entry in dirs:
601816Sbinkertn@umich.edu            newdir = joinpath(destdir, root, entry)
611816Sbinkertn@umich.edu            if not isdir(newdir):
621816Sbinkertn@umich.edu                os.mkdir(newdir)
631816Sbinkertn@umich.edu                print 'mkdir', newdir
641816Sbinkertn@umich.edu
651816Sbinkertn@umich.edu        for i,d in enumerate(dirs):
661816Sbinkertn@umich.edu            if islink(joinpath(srcdir, root, d)):
671816Sbinkertn@umich.edu                dirs[i] = joinpath(d, '.')
681816Sbinkertn@umich.edu
691816Sbinkertn@umich.edu        for entry in files:
701816Sbinkertn@umich.edu            dest = normpath(joinpath(destdir, root, entry))
711816Sbinkertn@umich.edu            src = normpath(joinpath(srcdir, root, entry))
721816Sbinkertn@umich.edu            if not isfile(dest) or not filecmp(src, dest):
731816Sbinkertn@umich.edu                print 'copy %s %s' % (dest, src)
741816Sbinkertn@umich.edu                copy(src, dest)
751816Sbinkertn@umich.edu
761385Sbinkertn@umich.eduprogpath = nfspath(sys.path[0])
771376Sbinkertn@umich.eduprogname = basename(sys.argv[0])
781376Sbinkertn@umich.eduusage = """\
791376Sbinkertn@umich.eduUsage:
801602Sbinkertn@umich.edu    %(progname)s [-c] [-e] [-f] [-j <jobfile>] [-q queue] [-v] <regexp>
811376Sbinkertn@umich.edu    -c           clean directory if job can be run
821376Sbinkertn@umich.edu    -e           only echo pbs command info, don't actually send the job
831376Sbinkertn@umich.edu    -f           force the job to run regardless of state
841376Sbinkertn@umich.edu    -q <queue>   submit job to the named queue
851916Sbinkertn@umich.edu    -j <jobfile> specify the jobfile (default is <rootdir>/Test.py)
861376Sbinkertn@umich.edu    -v           be verbose
871376Sbinkertn@umich.edu
881602Sbinkertn@umich.edu    %(progname)s [-j <jobfile>] -l [-v] <regexp>
891916Sbinkertn@umich.edu    -j <jobfile> specify the jobfile (default is <rootdir>/Test.py)
901376Sbinkertn@umich.edu    -l           list job names, don't submit
911376Sbinkertn@umich.edu    -v           be verbose (list job parameters)
921376Sbinkertn@umich.edu
931376Sbinkertn@umich.edu    %(progname)s -h
941376Sbinkertn@umich.edu    -h           display this help
951376Sbinkertn@umich.edu""" % locals()
961376Sbinkertn@umich.edu
971376Sbinkertn@umich.edutry:
981376Sbinkertn@umich.edu    import getopt
991948Sbinkertn@umich.edu    opts, args = getopt.getopt(sys.argv[1:], '-Ccdefhj:lnq:Rt:v')
1001376Sbinkertn@umich.eduexcept getopt.GetoptError:
1011376Sbinkertn@umich.edu    sys.exit(usage)
1021376Sbinkertn@umich.edu
1031916Sbinkertn@umich.edudepend = False
1041376Sbinkertn@umich.educlean = False
1051376Sbinkertn@umich.eduonlyecho = False
1061376Sbinkertn@umich.eduexprs = []
1071376Sbinkertn@umich.eduforce = False
1081376Sbinkertn@umich.edulistonly = False
1091376Sbinkertn@umich.eduqueue = ''
1101376Sbinkertn@umich.eduverbose = False
1111916Sbinkertn@umich.edujfile = 'Test.py'
1121881Sbinkertn@umich.edudocpts = False
1131881Sbinkertn@umich.edudoruns = True
1141881Sbinkertn@umich.edurunflag = False
1151916Sbinkertn@umich.edunode_type = 'FAST'
1161948Sbinkertn@umich.eduupdate = True
1171881Sbinkertn@umich.edu
1181381Sbinkertn@umich.edufor opt,arg in opts:
1191881Sbinkertn@umich.edu    if opt == '-C':
1201881Sbinkertn@umich.edu        docpts = True
1211381Sbinkertn@umich.edu    if opt == '-c':
1221376Sbinkertn@umich.edu        clean = True
1231916Sbinkertn@umich.edu    if opt == '-d':
1241916Sbinkertn@umich.edu        depend = True
1251381Sbinkertn@umich.edu    if opt == '-e':
1261376Sbinkertn@umich.edu        onlyecho = True
1271381Sbinkertn@umich.edu    if opt == '-f':
1281376Sbinkertn@umich.edu        force = True
1291381Sbinkertn@umich.edu    if opt == '-h':
1301376Sbinkertn@umich.edu        print usage
1311376Sbinkertn@umich.edu        sys.exit(0)
1321602Sbinkertn@umich.edu    if opt == '-j':
1331602Sbinkertn@umich.edu        jfile = arg
1341381Sbinkertn@umich.edu    if opt == '-l':
1351376Sbinkertn@umich.edu        listonly = True
1361948Sbinkertn@umich.edu    if opt == '-n':
1371948Sbinkertn@umich.edu        update = False
1381381Sbinkertn@umich.edu    if opt == '-q':
1391381Sbinkertn@umich.edu        queue = arg
1401916Sbinkertn@umich.edu    if opt == '-R':
1411916Sbinkertn@umich.edu        runflag = True
1421916Sbinkertn@umich.edu    if opt == '-t':
1431916Sbinkertn@umich.edu        node_type = arg
1441381Sbinkertn@umich.edu    if opt == '-v':
1451376Sbinkertn@umich.edu        verbose = True
1461376Sbinkertn@umich.edu
1471881Sbinkertn@umich.eduif docpts:
1481881Sbinkertn@umich.edu    doruns = runflag
1491381Sbinkertn@umich.edu
1501376Sbinkertn@umich.edufor arg in args:
1511376Sbinkertn@umich.edu    exprs.append(re.compile(arg))
1521376Sbinkertn@umich.edu
1531881Sbinkertn@umich.eduimport jobfile, pbs
1541881Sbinkertn@umich.edufrom job import JobDir, date
1551881Sbinkertn@umich.edu
1561881Sbinkertn@umich.educonf = jobfile.JobFile(jfile)
1571881Sbinkertn@umich.edu
1581948Sbinkertn@umich.eduif update and not listonly and not onlyecho and isdir(conf.linkdir):
1591385Sbinkertn@umich.edu    if verbose:
1601385Sbinkertn@umich.edu        print 'Checking for outdated files in Link directory'
1611916Sbinkertn@umich.edu    if not isdir(conf.basedir):
1621916Sbinkertn@umich.edu        os.mkdir(conf.basedir)
1631881Sbinkertn@umich.edu    syncdir(conf.linkdir, conf.basedir)
1641376Sbinkertn@umich.edu
1651881Sbinkertn@umich.edujobnames = {}
1661881Sbinkertn@umich.edujoblist = []
1671376Sbinkertn@umich.edu
1681881Sbinkertn@umich.eduif docpts and doruns:
1691881Sbinkertn@umich.edu    gen = conf.alljobs()
1701881Sbinkertn@umich.eduelif docpts:
1711881Sbinkertn@umich.edu    gen = conf.checkpoints()
1721881Sbinkertn@umich.eduelif doruns:
1731881Sbinkertn@umich.edu    gen = conf.jobs()
1741376Sbinkertn@umich.edu
1751881Sbinkertn@umich.edufor job in gen:
1761881Sbinkertn@umich.edu    if job.name in jobnames:
1771376Sbinkertn@umich.edu        continue
1781376Sbinkertn@umich.edu
1791881Sbinkertn@umich.edu    if exprs:
1801881Sbinkertn@umich.edu        for expr in exprs:
1811881Sbinkertn@umich.edu            if expr.match(job.name):
1821881Sbinkertn@umich.edu                joblist.append(job)
1831881Sbinkertn@umich.edu                break
1841881Sbinkertn@umich.edu    else:
1851881Sbinkertn@umich.edu        joblist.append(job)
1861376Sbinkertn@umich.edu
1871376Sbinkertn@umich.eduif listonly:
1881376Sbinkertn@umich.edu    if verbose:
1891881Sbinkertn@umich.edu        for job in joblist:
1901881Sbinkertn@umich.edu            job.printinfo()
1911376Sbinkertn@umich.edu    else:
1921881Sbinkertn@umich.edu        for job in joblist:
1931881Sbinkertn@umich.edu            print job.name
1941376Sbinkertn@umich.edu    sys.exit(0)
1951376Sbinkertn@umich.edu
1961376Sbinkertn@umich.eduif not onlyecho:
1971881Sbinkertn@umich.edu    newlist = []
1981881Sbinkertn@umich.edu    for job in joblist:
1991881Sbinkertn@umich.edu        jobdir = JobDir(joinpath(conf.rootdir, job.name))
2001881Sbinkertn@umich.edu        if jobdir.exists():
2011376Sbinkertn@umich.edu            if not force:
2021881Sbinkertn@umich.edu                status = jobdir.getstatus()
2031881Sbinkertn@umich.edu                if status == 'queued':
2041376Sbinkertn@umich.edu                    continue
2051376Sbinkertn@umich.edu
2061881Sbinkertn@umich.edu                if status == 'running':
2071881Sbinkertn@umich.edu                    continue
2081881Sbinkertn@umich.edu
2091881Sbinkertn@umich.edu                if status == 'success':
2101376Sbinkertn@umich.edu                    continue
2111376Sbinkertn@umich.edu
2121376Sbinkertn@umich.edu            if not clean:
2131881Sbinkertn@umich.edu                sys.exit('job directory %s not clean!' % jobdir)
2141376Sbinkertn@umich.edu
2151881Sbinkertn@umich.edu            jobdir.clean()
2161881Sbinkertn@umich.edu        newlist.append(job)
2171881Sbinkertn@umich.edu    joblist = newlist
2181376Sbinkertn@umich.edu
2191881Sbinkertn@umich.educlass NameHack(object):
2201881Sbinkertn@umich.edu    def __init__(self, host='pbs.pool', port=24465):
2211881Sbinkertn@umich.edu        self.host = host
2221881Sbinkertn@umich.edu        self.port = port
2231881Sbinkertn@umich.edu        self.socket = None
2241816Sbinkertn@umich.edu
2251881Sbinkertn@umich.edu    def setname(self, jobid, jobname):
2261881Sbinkertn@umich.edu        try:
2271881Sbinkertn@umich.edu            jobid = int(jobid)
2281881Sbinkertn@umich.edu        except ValueError:
2291881Sbinkertn@umich.edu            jobid = int(jobid.strip().split('.')[0])
2301816Sbinkertn@umich.edu
2311881Sbinkertn@umich.edu        jobname = jobname.strip()
2321881Sbinkertn@umich.edu        # since pbs can handle jobnames of 15 characters or less,
2331881Sbinkertn@umich.edu        # don't use the raj hack.
2341881Sbinkertn@umich.edu        if len(jobname) <= 15:
2351881Sbinkertn@umich.edu            return
2361376Sbinkertn@umich.edu
2371881Sbinkertn@umich.edu        if self.socket is None:
2381881Sbinkertn@umich.edu            import socket
2391881Sbinkertn@umich.edu            self.socket = socket.socket()
2401881Sbinkertn@umich.edu            # Connect to pbs.pool and send the jobid/jobname pair to port
2411881Sbinkertn@umich.edu            # 24465 (Raj didn't realize that there are only 64k ports and
2421881Sbinkertn@umich.edu            # setup inetd to point to port 90001)
2431881Sbinkertn@umich.edu            self.socket.connect((self.host, self.port))
2441376Sbinkertn@umich.edu
2451881Sbinkertn@umich.edu        self.socket.send("%s %s\n" % (jobid, jobname))
2461881Sbinkertn@umich.edu
2471881Sbinkertn@umich.edunamehack = NameHack()
2481881Sbinkertn@umich.edu
2491881Sbinkertn@umich.edufor job in joblist:
2501881Sbinkertn@umich.edu    jobdir = JobDir(joinpath(conf.rootdir, job.name))
2511916Sbinkertn@umich.edu    if depend:
2521916Sbinkertn@umich.edu        cptdir = JobDir(joinpath(conf.rootdir, job.checkpoint.name))
2531916Sbinkertn@umich.edu        cptjob = cptdir.readval('.pbs_jobid')
2541881Sbinkertn@umich.edu
2551881Sbinkertn@umich.edu    if not onlyecho:
2561881Sbinkertn@umich.edu        jobdir.create()
2571881Sbinkertn@umich.edu
2581881Sbinkertn@umich.edu    print 'Job name:       %s' % job.name
2591385Sbinkertn@umich.edu    print 'Job directory:  %s' % jobdir
2601376Sbinkertn@umich.edu
2611376Sbinkertn@umich.edu    qsub = pbs.qsub()
2621376Sbinkertn@umich.edu    qsub.pbshost = 'simpool.eecs.umich.edu'
2631881Sbinkertn@umich.edu    qsub.stdout = jobdir.file('jobout')
2641881Sbinkertn@umich.edu    qsub.name = job.name[:15]
2651376Sbinkertn@umich.edu    qsub.join = True
2661916Sbinkertn@umich.edu    qsub.node_type = node_type
2671881Sbinkertn@umich.edu    qsub.env['ROOTDIR'] = conf.rootdir
2681881Sbinkertn@umich.edu    qsub.env['JOBNAME'] = job.name
2691916Sbinkertn@umich.edu    if depend:
2701916Sbinkertn@umich.edu        qsub.afterok = cptjob
2711916Sbinkertn@umich.edu    if queue:
2721376Sbinkertn@umich.edu        qsub.queue = queue
2731385Sbinkertn@umich.edu    qsub.build(joinpath(progpath, 'job.py'))
2741376Sbinkertn@umich.edu
2751385Sbinkertn@umich.edu    if verbose:
2761385Sbinkertn@umich.edu        print 'PBS Command:    %s' % qsub.command
2771385Sbinkertn@umich.edu
2781385Sbinkertn@umich.edu    if not onlyecho:
2791385Sbinkertn@umich.edu        ec = qsub.do()
2801385Sbinkertn@umich.edu        if ec == 0:
2811816Sbinkertn@umich.edu            jobid = qsub.result
2821816Sbinkertn@umich.edu            print 'PBS Jobid:      %s' % jobid
2831881Sbinkertn@umich.edu            namehack.setname(jobid, job.name)
2841881Sbinkertn@umich.edu            queued = date()
2851908Sbinkertn@umich.edu            jobdir.echofile('.pbs_jobid', jobid)
2861908Sbinkertn@umich.edu            jobdir.echofile('.pbs_jobname', job.name)
2871881Sbinkertn@umich.edu            jobdir.echofile('.queued', queued)
2881881Sbinkertn@umich.edu            jobdir.setstatus('queued on %s' % queued)
2891385Sbinkertn@umich.edu        else:
2901385Sbinkertn@umich.edu            print 'PBS Failed'
291