send.py revision 1385
11376Sbinkertn@umich.edu#!/usr/bin/env python
21376Sbinkertn@umich.edu# Copyright (c) 2005 The Regents of The University of Michigan
31376Sbinkertn@umich.edu# All rights reserved.
41376Sbinkertn@umich.edu#
51376Sbinkertn@umich.edu# Redistribution and use in source and binary forms, with or without
61376Sbinkertn@umich.edu# modification, are permitted provided that the following conditions are
71376Sbinkertn@umich.edu# met: redistributions of source code must retain the above copyright
81376Sbinkertn@umich.edu# notice, this list of conditions and the following disclaimer;
91376Sbinkertn@umich.edu# redistributions in binary form must reproduce the above copyright
101376Sbinkertn@umich.edu# notice, this list of conditions and the following disclaimer in the
111376Sbinkertn@umich.edu# documentation and/or other materials provided with the distribution;
121376Sbinkertn@umich.edu# neither the name of the copyright holders nor the names of its
131376Sbinkertn@umich.edu# contributors may be used to endorse or promote products derived from
141376Sbinkertn@umich.edu# this software without specific prior written permission.
151376Sbinkertn@umich.edu#
161376Sbinkertn@umich.edu# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
171376Sbinkertn@umich.edu# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
181376Sbinkertn@umich.edu# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
191376Sbinkertn@umich.edu# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
201376Sbinkertn@umich.edu# OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
211376Sbinkertn@umich.edu# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
221376Sbinkertn@umich.edu# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
231376Sbinkertn@umich.edu# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
241376Sbinkertn@umich.edu# THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
251376Sbinkertn@umich.edu# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
261376Sbinkertn@umich.edu# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
271376Sbinkertn@umich.edu#
281376Sbinkertn@umich.edu# Authors: Ali Saidi
291376Sbinkertn@umich.edu#          Nathan Binkert
301376Sbinkertn@umich.edu
311385Sbinkertn@umich.eduimport os, os.path, re, socket, sys
321376Sbinkertn@umich.edufrom os import environ as env, listdir
331376Sbinkertn@umich.edufrom os.path import basename, isdir, isfile, islink, join as joinpath
341376Sbinkertn@umich.edufrom filecmp import cmp as filecmp
351376Sbinkertn@umich.edufrom shutil import copyfile
361376Sbinkertn@umich.edu
371385Sbinkertn@umich.edudef nfspath(dir):
381385Sbinkertn@umich.edu    if dir.startswith('/.automount/'):
391385Sbinkertn@umich.edu        dir = '/n/%s' % dir[12:]
401385Sbinkertn@umich.edu    elif not dir.startswith('/n/'):
411385Sbinkertn@umich.edu        dir = '/n/%s%s' % (socket.gethostname().split('.')[0], dir)
421385Sbinkertn@umich.edu    return dir
431385Sbinkertn@umich.edu
441385Sbinkertn@umich.eduprogpath = nfspath(sys.path[0])
451376Sbinkertn@umich.eduprogname = basename(sys.argv[0])
461376Sbinkertn@umich.eduusage = """\
471376Sbinkertn@umich.eduUsage:
481376Sbinkertn@umich.edu    %(progname)s [-c] [-e] [-f] [-q queue] [-v] <regexp>
491376Sbinkertn@umich.edu    -c           clean directory if job can be run
501376Sbinkertn@umich.edu    -e           only echo pbs command info, don't actually send the job
511376Sbinkertn@umich.edu    -f           force the job to run regardless of state
521376Sbinkertn@umich.edu    -q <queue>   submit job to the named queue
531376Sbinkertn@umich.edu    -v           be verbose
541376Sbinkertn@umich.edu
551376Sbinkertn@umich.edu    %(progname)s -l [-v] <regexp>
561376Sbinkertn@umich.edu    -l           list job names, don't submit
571376Sbinkertn@umich.edu    -v           be verbose (list job parameters)
581376Sbinkertn@umich.edu
591376Sbinkertn@umich.edu    %(progname)s -h
601376Sbinkertn@umich.edu    -h           display this help
611376Sbinkertn@umich.edu""" % locals()
621376Sbinkertn@umich.edu
631376Sbinkertn@umich.edutry:
641376Sbinkertn@umich.edu    import getopt
651381Sbinkertn@umich.edu    opts, args = getopt.getopt(sys.argv[1:], '-cd:efhlq:v')
661376Sbinkertn@umich.eduexcept getopt.GetoptError:
671376Sbinkertn@umich.edu    sys.exit(usage)
681376Sbinkertn@umich.edu
691376Sbinkertn@umich.educlean = False
701376Sbinkertn@umich.eduonlyecho = False
711376Sbinkertn@umich.eduexprs = []
721376Sbinkertn@umich.eduforce = False
731376Sbinkertn@umich.edulistonly = False
741376Sbinkertn@umich.eduqueue = ''
751376Sbinkertn@umich.eduverbose = False
761385Sbinkertn@umich.edurootdir = nfspath(os.getcwd())
771381Sbinkertn@umich.edufor opt,arg in opts:
781381Sbinkertn@umich.edu    if opt == '-c':
791376Sbinkertn@umich.edu        clean = True
801381Sbinkertn@umich.edu    if opt == '-d':
811381Sbinkertn@umich.edu        rootdir = arg
821381Sbinkertn@umich.edu    if opt == '-e':
831376Sbinkertn@umich.edu        onlyecho = True
841381Sbinkertn@umich.edu    if opt == '-f':
851376Sbinkertn@umich.edu        force = True
861381Sbinkertn@umich.edu    if opt == '-h':
871376Sbinkertn@umich.edu        print usage
881376Sbinkertn@umich.edu        sys.exit(0)
891381Sbinkertn@umich.edu    if opt == '-l':
901376Sbinkertn@umich.edu        listonly = True
911381Sbinkertn@umich.edu    if opt == '-q':
921381Sbinkertn@umich.edu        queue = arg
931381Sbinkertn@umich.edu    if opt == '-v':
941376Sbinkertn@umich.edu        verbose = True
951376Sbinkertn@umich.edu
961381Sbinkertn@umich.edubasedir = joinpath(rootdir, 'Base')
971381Sbinkertn@umich.edulinkdir = joinpath(rootdir, 'Link')
981381Sbinkertn@umich.edu
991376Sbinkertn@umich.edufor arg in args:
1001376Sbinkertn@umich.edu    exprs.append(re.compile(arg))
1011376Sbinkertn@umich.edu
1021381Sbinkertn@umich.eduif not listonly and not onlyecho and isdir(linkdir):
1031385Sbinkertn@umich.edu    if verbose:
1041385Sbinkertn@umich.edu        print 'Checking for outdated files in Link directory'
1051381Sbinkertn@umich.edu    entries = listdir(linkdir)
1061376Sbinkertn@umich.edu    for entry in entries:
1071381Sbinkertn@umich.edu        link = joinpath(linkdir, entry)
1081381Sbinkertn@umich.edu        if not islink(link) or not isfile(link):
1091376Sbinkertn@umich.edu            continue
1101376Sbinkertn@umich.edu
1111381Sbinkertn@umich.edu        base = joinpath(basedir, entry)
1121376Sbinkertn@umich.edu        if not isfile(base) or not filecmp(link, base):
1131381Sbinkertn@umich.edu            print 'Base/%s is different than Link/%s: copying' % (entry, entry)
1141376Sbinkertn@umich.edu            copyfile(link, base)
1151376Sbinkertn@umich.edu
1161376Sbinkertn@umich.eduimport job, jobfile, pbs
1171376Sbinkertn@umich.edu
1181381Sbinkertn@umich.edutest = jobfile.JobFile(joinpath(basedir, 'test.py'))
1191376Sbinkertn@umich.edu
1201376Sbinkertn@umich.edujoblist = []
1211376Sbinkertn@umich.edufor jobname in test.jobs:
1221376Sbinkertn@umich.edu    if not exprs:
1231376Sbinkertn@umich.edu        joblist.append(jobname)
1241376Sbinkertn@umich.edu        continue
1251376Sbinkertn@umich.edu
1261376Sbinkertn@umich.edu    for expr in exprs:
1271376Sbinkertn@umich.edu        if expr.match(jobname):
1281376Sbinkertn@umich.edu            joblist.append(jobname)
1291376Sbinkertn@umich.edu            break
1301376Sbinkertn@umich.edu
1311376Sbinkertn@umich.eduif listonly:
1321376Sbinkertn@umich.edu    if verbose:
1331376Sbinkertn@umich.edu        for jobname in joblist:
1341376Sbinkertn@umich.edu            test.printinfo(jobname)
1351376Sbinkertn@umich.edu    else:
1361376Sbinkertn@umich.edu        for jobname in joblist:
1371376Sbinkertn@umich.edu            print jobname
1381376Sbinkertn@umich.edu    sys.exit(0)
1391376Sbinkertn@umich.edu
1401376Sbinkertn@umich.eduif not onlyecho:
1411376Sbinkertn@umich.edu    jl = []
1421376Sbinkertn@umich.edu    for jobname in joblist:
1431383Sbinkertn@umich.edu        jobdir = joinpath(rootdir, jobname)
1441376Sbinkertn@umich.edu        if os.path.exists(jobname):
1451376Sbinkertn@umich.edu            if not force:
1461383Sbinkertn@umich.edu                if os.path.isfile(joinpath(jobdir, '.success')):
1471376Sbinkertn@umich.edu                    continue
1481376Sbinkertn@umich.edu
1491383Sbinkertn@umich.edu                if os.path.isfile(joinpath(jobdir, '.start')) and \
1501383Sbinkertn@umich.edu                       not os.path.isfile(joinpath(jobdir, '.stop')):
1511376Sbinkertn@umich.edu                    continue
1521376Sbinkertn@umich.edu
1531376Sbinkertn@umich.edu            if not clean:
1541376Sbinkertn@umich.edu                sys.exit('job directory not clean!')
1551376Sbinkertn@umich.edu
1561383Sbinkertn@umich.edu            job.cleandir(jobdir)
1571376Sbinkertn@umich.edu        else:
1581383Sbinkertn@umich.edu            os.mkdir(jobdir)
1591376Sbinkertn@umich.edu    jl.append(jobname)
1601376Sbinkertn@umich.edu    joblist = jl
1611376Sbinkertn@umich.edu
1621376Sbinkertn@umich.edufor jobname in joblist:
1631376Sbinkertn@umich.edu    jobdir = joinpath(rootdir, jobname)
1641376Sbinkertn@umich.edu
1651376Sbinkertn@umich.edu    if not onlyecho and not os.path.isdir(jobdir):
1661376Sbinkertn@umich.edu        sys.exit('%s is not a directory.  Cannot build job' % jobdir)
1671376Sbinkertn@umich.edu
1681385Sbinkertn@umich.edu    print 'Job name:       %s' % jobname
1691385Sbinkertn@umich.edu    print 'Job directory:  %s' % jobdir
1701376Sbinkertn@umich.edu
1711376Sbinkertn@umich.edu    qsub = pbs.qsub()
1721376Sbinkertn@umich.edu    qsub.pbshost = 'simpool.eecs.umich.edu'
1731376Sbinkertn@umich.edu    qsub.stdout = joinpath(jobdir, 'jobout')
1741376Sbinkertn@umich.edu    qsub.name = jobname
1751376Sbinkertn@umich.edu    qsub.join = True
1761376Sbinkertn@umich.edu    qsub.node_type = 'FAST'
1771376Sbinkertn@umich.edu    qsub.env['ROOTDIR'] = rootdir
1781376Sbinkertn@umich.edu    if len(queue):
1791376Sbinkertn@umich.edu        qsub.queue = queue
1801385Sbinkertn@umich.edu    qsub.build(joinpath(progpath, 'job.py'))
1811376Sbinkertn@umich.edu
1821385Sbinkertn@umich.edu    if verbose:
1831385Sbinkertn@umich.edu        print 'PBS Command:    %s' % qsub.command
1841385Sbinkertn@umich.edu
1851385Sbinkertn@umich.edu    if not onlyecho:
1861385Sbinkertn@umich.edu        ec = qsub.do()
1871385Sbinkertn@umich.edu        if ec == 0:
1881385Sbinkertn@umich.edu            print 'PBS Jobid:      %s' % qsub.result
1891385Sbinkertn@umich.edu        else:
1901385Sbinkertn@umich.edu            print 'PBS Failed'
191