pbs.py revision 1386
11376Sbinkertn@umich.edu# Copyright (c) 2005 The Regents of The University of Michigan
21376Sbinkertn@umich.edu# All rights reserved.
31376Sbinkertn@umich.edu#
41376Sbinkertn@umich.edu# Redistribution and use in source and binary forms, with or without
51376Sbinkertn@umich.edu# modification, are permitted provided that the following conditions are
61376Sbinkertn@umich.edu# met: redistributions of source code must retain the above copyright
71376Sbinkertn@umich.edu# notice, this list of conditions and the following disclaimer;
81376Sbinkertn@umich.edu# redistributions in binary form must reproduce the above copyright
91376Sbinkertn@umich.edu# notice, this list of conditions and the following disclaimer in the
101376Sbinkertn@umich.edu# documentation and/or other materials provided with the distribution;
111376Sbinkertn@umich.edu# neither the name of the copyright holders nor the names of its
121376Sbinkertn@umich.edu# contributors may be used to endorse or promote products derived from
131376Sbinkertn@umich.edu# this software without specific prior written permission.
141376Sbinkertn@umich.edu#
151376Sbinkertn@umich.edu# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
161376Sbinkertn@umich.edu# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
171376Sbinkertn@umich.edu# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
181376Sbinkertn@umich.edu# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
191376Sbinkertn@umich.edu# OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
201376Sbinkertn@umich.edu# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
211376Sbinkertn@umich.edu# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
221376Sbinkertn@umich.edu# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
231376Sbinkertn@umich.edu# THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
241376Sbinkertn@umich.edu# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
251376Sbinkertn@umich.edu# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
261376Sbinkertn@umich.edu#
271376Sbinkertn@umich.edu# Authors: Nathan Binkert
281376Sbinkertn@umich.edu
291385Sbinkertn@umich.eduimport os, popen2, re, sys
301376Sbinkertn@umich.edu
311385Sbinkertn@umich.educlass MyPOpen(object):
321385Sbinkertn@umich.edu    def __init__(self, cmd, input = None, output = None, bufsize = -1):
331386Sbinkertn@umich.edu        self.status = -1
341376Sbinkertn@umich.edu
351385Sbinkertn@umich.edu        if input is None:
361385Sbinkertn@umich.edu            p2c_read, p2c_write = os.pipe()
371385Sbinkertn@umich.edu            self.tochild = os.fdopen(p2c_write, 'w', bufsize)
381385Sbinkertn@umich.edu        else:
391385Sbinkertn@umich.edu            p2c_write = None
401385Sbinkertn@umich.edu            if isinstance(input, file):
411385Sbinkertn@umich.edu                p2c_read = input.fileno()
421385Sbinkertn@umich.edu            elif isinstance(input, str):
431385Sbinkertn@umich.edu                input = file(input, 'r')
441385Sbinkertn@umich.edu                p2c_read = input.fileno()
451385Sbinkertn@umich.edu            elif isinstance(input, int):
461385Sbinkertn@umich.edu                p2c_read = input
471385Sbinkertn@umich.edu            else:
481385Sbinkertn@umich.edu                raise AttributeError
491385Sbinkertn@umich.edu
501385Sbinkertn@umich.edu        if output is None:
511385Sbinkertn@umich.edu            c2p_read, c2p_write = os.pipe()
521385Sbinkertn@umich.edu            self.fromchild = os.fdopen(c2p_read, 'r', bufsize)
531385Sbinkertn@umich.edu        else:
541385Sbinkertn@umich.edu            c2p_read = None
551385Sbinkertn@umich.edu            if isinstance(output, file):
561385Sbinkertn@umich.edu                c2p_write = output.fileno()
571385Sbinkertn@umich.edu            elif isinstance(output, str):
581385Sbinkertn@umich.edu                output = file(output, 'w')
591385Sbinkertn@umich.edu                c2p_write = output.fileno()
601385Sbinkertn@umich.edu            elif isinstance(output, int):
611385Sbinkertn@umich.edu                c2p_write = output
621385Sbinkertn@umich.edu            else:
631385Sbinkertn@umich.edu                raise AttributeError
641385Sbinkertn@umich.edu
651385Sbinkertn@umich.edu        self.pid = os.fork()
661385Sbinkertn@umich.edu        if self.pid == 0:
671386Sbinkertn@umich.edu            os.dup2(p2c_read, sys.stdin.fileno())
681386Sbinkertn@umich.edu            os.dup2(c2p_write, sys.stdout.fileno())
691386Sbinkertn@umich.edu            os.dup2(c2p_write, sys.stderr.fileno())
701385Sbinkertn@umich.edu            try:
711385Sbinkertn@umich.edu                os.execvp(cmd[0], cmd)
721385Sbinkertn@umich.edu            finally:
731385Sbinkertn@umich.edu                os._exit(1)
741385Sbinkertn@umich.edu
751385Sbinkertn@umich.edu        os.close(p2c_read)
761385Sbinkertn@umich.edu        os.close(c2p_write)
771385Sbinkertn@umich.edu
781385Sbinkertn@umich.edu    def poll(self):
791386Sbinkertn@umich.edu        if self.status < 0:
801386Sbinkertn@umich.edu            pid, status = os.waitpid(self.pid, os.WNOHANG)
811385Sbinkertn@umich.edu            if pid == self.pid:
821386Sbinkertn@umich.edu                self.status = status
831386Sbinkertn@umich.edu        return self.status
841385Sbinkertn@umich.edu
851385Sbinkertn@umich.edu    def wait(self):
861386Sbinkertn@umich.edu        if self.status < 0:
871386Sbinkertn@umich.edu            pid, status = os.waitpid(self.pid, 0)
881385Sbinkertn@umich.edu            if pid == self.pid:
891386Sbinkertn@umich.edu                self.status = status
901386Sbinkertn@umich.edu        return self.status
911376Sbinkertn@umich.edu
921376Sbinkertn@umich.educlass qsub:
931376Sbinkertn@umich.edu    def __init__(self):
941376Sbinkertn@umich.edu        self.hold = False
951376Sbinkertn@umich.edu        self.join = False
961376Sbinkertn@umich.edu        self.keep_stdout = False
971376Sbinkertn@umich.edu        self.keep_stderr = False
981376Sbinkertn@umich.edu        self.node_type = ''
991376Sbinkertn@umich.edu        self.mail_abort = False
1001376Sbinkertn@umich.edu        self.mail_begin = False
1011376Sbinkertn@umich.edu        self.mail_end = False
1021376Sbinkertn@umich.edu        self.name = ''
1031376Sbinkertn@umich.edu        self.stdout = ''
1041376Sbinkertn@umich.edu        self.priority = 0
1051376Sbinkertn@umich.edu        self.queue = ''
1061376Sbinkertn@umich.edu        self.pbshost = ''
1071376Sbinkertn@umich.edu        self.qsub = 'qsub'
1081376Sbinkertn@umich.edu        self.env = {}
1091376Sbinkertn@umich.edu
1101385Sbinkertn@umich.edu    def build(self, script, args = []):
1111385Sbinkertn@umich.edu        self.cmd = [ self.qsub ]
1121376Sbinkertn@umich.edu
1131376Sbinkertn@umich.edu        if self.env:
1141376Sbinkertn@umich.edu            arg = '-v'
1151376Sbinkertn@umich.edu            arg += ','.join([ '%s=%s' % i for i in self.env.iteritems() ])
1161385Sbinkertn@umich.edu            self.cmd.append(arg)
1171376Sbinkertn@umich.edu
1181376Sbinkertn@umich.edu        if self.hold:
1191385Sbinkertn@umich.edu            self.cmd.append('-h')
1201376Sbinkertn@umich.edu
1211376Sbinkertn@umich.edu        if len(self.stdout):
1221385Sbinkertn@umich.edu            self.cmd.append('-olocalhost:' + self.stdout)
1231376Sbinkertn@umich.edu
1241376Sbinkertn@umich.edu        if self.keep_stdout and self.keep_stderr:
1251385Sbinkertn@umich.edu            self.cmd.append('-koe')
1261376Sbinkertn@umich.edu        elif self.keep_stdout:
1271385Sbinkertn@umich.edu            self.cmd.append('-ko')
1281376Sbinkertn@umich.edu        elif self.keep_stderr:
1291385Sbinkertn@umich.edu            self.cmd.append('-ke')
1301376Sbinkertn@umich.edu        else:
1311385Sbinkertn@umich.edu            self.cmd.append('-kn')
1321376Sbinkertn@umich.edu
1331376Sbinkertn@umich.edu        if self.join:
1341385Sbinkertn@umich.edu            self.cmd.append('-joe')
1351376Sbinkertn@umich.edu
1361376Sbinkertn@umich.edu        if len(self.node_type):
1371385Sbinkertn@umich.edu            self.cmd.append('-lnodes=' + self.node_type)
1381376Sbinkertn@umich.edu
1391376Sbinkertn@umich.edu        if self.mail_abort or self.mail_begin or self.mail_end:
1401376Sbinkertn@umich.edu            flags = ''
1411376Sbinkertn@umich.edu            if self.mail_abort:
1421376Sbinkertn@umich.edu                flags.append('a')
1431376Sbinkertn@umich.edu            if self.mail_begin:
1441376Sbinkertn@umich.edu                flags.append('b')
1451376Sbinkertn@umich.edu            if self.mail_end:
1461376Sbinkertn@umich.edu                flags.append('e')
1471376Sbinkertn@umich.edu            if len(flags):
1481385Sbinkertn@umich.edu                self.cmd.append('-m ' + flags)
1491376Sbinkertn@umich.edu
1501376Sbinkertn@umich.edu        if len(self.name):
1511385Sbinkertn@umich.edu            self.cmd.append("-N%s" % self.name)
1521376Sbinkertn@umich.edu
1531376Sbinkertn@umich.edu        if self.priority != 0:
1541385Sbinkertn@umich.edu            self.cmd.append('-p' + self.priority)
1551376Sbinkertn@umich.edu
1561376Sbinkertn@umich.edu        if len(self.queue):
1571385Sbinkertn@umich.edu            self.cmd.append('-q' + self.queue)
1581376Sbinkertn@umich.edu
1591385Sbinkertn@umich.edu        self.cmd.extend(args)
1601385Sbinkertn@umich.edu        self.script = script
1611385Sbinkertn@umich.edu        self.command = ' '.join(self.cmd + [ self.script ])
1621376Sbinkertn@umich.edu
1631385Sbinkertn@umich.edu    def do(self):
1641385Sbinkertn@umich.edu        pbs = MyPOpen(self.cmd + [ self.script ])
1651385Sbinkertn@umich.edu        self.result = pbs.fromchild.read()
1661385Sbinkertn@umich.edu        ec = pbs.wait()
1671376Sbinkertn@umich.edu
1681385Sbinkertn@umich.edu        if ec != 0 and self.pbshost:
1691385Sbinkertn@umich.edu            cmd = ' '.join(self.cmd + [ '-' ])
1701385Sbinkertn@umich.edu            cmd = [ 'ssh', '-x', self.pbshost, cmd ]
1711385Sbinkertn@umich.edu            self.command = ' '.join(cmd)
1721385Sbinkertn@umich.edu            ssh = MyPOpen(cmd, input = self.script)
1731385Sbinkertn@umich.edu            self.result = ssh.fromchild.read()
1741385Sbinkertn@umich.edu            ec = ssh.wait()
1751376Sbinkertn@umich.edu
1761376Sbinkertn@umich.edu        return ec
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