test_numpy_dtypes.cpp revision 12391:ceeca8b41e4b
112855Sgabeblack@google.com/*
212855Sgabeblack@google.com  tests/test_numpy_dtypes.cpp -- Structured and compound NumPy dtypes
312855Sgabeblack@google.com
412855Sgabeblack@google.com  Copyright (c) 2016 Ivan Smirnov
512855Sgabeblack@google.com
612855Sgabeblack@google.com  All rights reserved. Use of this source code is governed by a
712855Sgabeblack@google.com  BSD-style license that can be found in the LICENSE file.
812855Sgabeblack@google.com*/
912855Sgabeblack@google.com
1012855Sgabeblack@google.com#include "pybind11_tests.h"
1112855Sgabeblack@google.com#include <pybind11/numpy.h>
1212855Sgabeblack@google.com
1312855Sgabeblack@google.com#ifdef __GNUC__
1412855Sgabeblack@google.com#define PYBIND11_PACKED(cls) cls __attribute__((__packed__))
1512855Sgabeblack@google.com#else
1612855Sgabeblack@google.com#define PYBIND11_PACKED(cls) __pragma(pack(push, 1)) cls __pragma(pack(pop))
1712855Sgabeblack@google.com#endif
1812855Sgabeblack@google.com
1912855Sgabeblack@google.comnamespace py = pybind11;
2012855Sgabeblack@google.com
2112855Sgabeblack@google.comstruct SimpleStruct {
2212855Sgabeblack@google.com    bool bool_;
2312855Sgabeblack@google.com    uint32_t uint_;
2412855Sgabeblack@google.com    float float_;
2512855Sgabeblack@google.com    long double ldbl_;
2612855Sgabeblack@google.com};
2712855Sgabeblack@google.com
2812855Sgabeblack@google.comstd::ostream& operator<<(std::ostream& os, const SimpleStruct& v) {
2912855Sgabeblack@google.com    return os << "s:" << v.bool_ << "," << v.uint_ << "," << v.float_ << "," << v.ldbl_;
3012855Sgabeblack@google.com}
3112855Sgabeblack@google.com
3212855Sgabeblack@google.comPYBIND11_PACKED(struct PackedStruct {
3312855Sgabeblack@google.com    bool bool_;
3412855Sgabeblack@google.com    uint32_t uint_;
3512855Sgabeblack@google.com    float float_;
3612855Sgabeblack@google.com    long double ldbl_;
3712855Sgabeblack@google.com});
3812855Sgabeblack@google.com
3912855Sgabeblack@google.comstd::ostream& operator<<(std::ostream& os, const PackedStruct& v) {
4012855Sgabeblack@google.com    return os << "p:" << v.bool_ << "," << v.uint_ << "," << v.float_ << "," << v.ldbl_;
4112855Sgabeblack@google.com}
4212855Sgabeblack@google.com
4312855Sgabeblack@google.comPYBIND11_PACKED(struct NestedStruct {
4412855Sgabeblack@google.com    SimpleStruct a;
4512855Sgabeblack@google.com    PackedStruct b;
4612855Sgabeblack@google.com});
4712855Sgabeblack@google.com
4812855Sgabeblack@google.comstd::ostream& operator<<(std::ostream& os, const NestedStruct& v) {
4912855Sgabeblack@google.com    return os << "n:a=" << v.a << ";b=" << v.b;
5012855Sgabeblack@google.com}
5112855Sgabeblack@google.com
5212855Sgabeblack@google.comstruct PartialStruct {
5312855Sgabeblack@google.com    bool bool_;
5412855Sgabeblack@google.com    uint32_t uint_;
5512855Sgabeblack@google.com    float float_;
5612855Sgabeblack@google.com    uint64_t dummy2;
5712855Sgabeblack@google.com    long double ldbl_;
5812855Sgabeblack@google.com};
5912855Sgabeblack@google.com
6012855Sgabeblack@google.comstruct PartialNestedStruct {
61    uint64_t dummy1;
62    PartialStruct a;
63    uint64_t dummy2;
64};
65
66struct UnboundStruct { };
67
68struct StringStruct {
69    char a[3];
70    std::array<char, 3> b;
71};
72
73struct ComplexStruct {
74    std::complex<float> cflt;
75    std::complex<double> cdbl;
76};
77
78std::ostream& operator<<(std::ostream& os, const ComplexStruct& v) {
79    return os << "c:" << v.cflt << "," << v.cdbl;
80}
81
82struct ArrayStruct {
83    char a[3][4];
84    int32_t b[2];
85    std::array<uint8_t, 3> c;
86    std::array<float, 2> d[4];
87};
88
89PYBIND11_PACKED(struct StructWithUglyNames {
90    int8_t __x__;
91    uint64_t __y__;
92});
93
94enum class E1 : int64_t { A = -1, B = 1 };
95enum E2 : uint8_t { X = 1, Y = 2 };
96
97PYBIND11_PACKED(struct EnumStruct {
98    E1 e1;
99    E2 e2;
100});
101
102std::ostream& operator<<(std::ostream& os, const StringStruct& v) {
103    os << "a='";
104    for (size_t i = 0; i < 3 && v.a[i]; i++) os << v.a[i];
105    os << "',b='";
106    for (size_t i = 0; i < 3 && v.b[i]; i++) os << v.b[i];
107    return os << "'";
108}
109
110std::ostream& operator<<(std::ostream& os, const ArrayStruct& v) {
111    os << "a={";
112    for (int i = 0; i < 3; i++) {
113        if (i > 0)
114            os << ',';
115        os << '{';
116        for (int j = 0; j < 3; j++)
117            os << v.a[i][j] << ',';
118        os << v.a[i][3] << '}';
119    }
120    os << "},b={" << v.b[0] << ',' << v.b[1];
121    os << "},c={" << int(v.c[0]) << ',' << int(v.c[1]) << ',' << int(v.c[2]);
122    os << "},d={";
123    for (int i = 0; i < 4; i++) {
124        if (i > 0)
125            os << ',';
126        os << '{' << v.d[i][0] << ',' << v.d[i][1] << '}';
127    }
128    return os << '}';
129}
130
131std::ostream& operator<<(std::ostream& os, const EnumStruct& v) {
132    return os << "e1=" << (v.e1 == E1::A ? "A" : "B") << ",e2=" << (v.e2 == E2::X ? "X" : "Y");
133}
134
135template <typename T>
136py::array mkarray_via_buffer(size_t n) {
137    return py::array(py::buffer_info(nullptr, sizeof(T),
138                                     py::format_descriptor<T>::format(),
139                                     1, { n }, { sizeof(T) }));
140}
141
142#define SET_TEST_VALS(s, i) do { \
143    s.bool_ = (i) % 2 != 0; \
144    s.uint_ = (uint32_t) (i); \
145    s.float_ = (float) (i) * 1.5f; \
146    s.ldbl_ = (long double) (i) * -2.5L; } while (0)
147
148template <typename S>
149py::array_t<S, 0> create_recarray(size_t n) {
150    auto arr = mkarray_via_buffer<S>(n);
151    auto req = arr.request();
152    auto ptr = static_cast<S*>(req.ptr);
153    for (size_t i = 0; i < n; i++) {
154        SET_TEST_VALS(ptr[i], i);
155    }
156    return arr;
157}
158
159template <typename S>
160py::list print_recarray(py::array_t<S, 0> arr) {
161    const auto req = arr.request();
162    const auto ptr = static_cast<S*>(req.ptr);
163    auto l = py::list();
164    for (ssize_t i = 0; i < req.size; i++) {
165        std::stringstream ss;
166        ss << ptr[i];
167        l.append(py::str(ss.str()));
168    }
169    return l;
170}
171
172py::array_t<int32_t, 0> test_array_ctors(int i) {
173    using arr_t = py::array_t<int32_t, 0>;
174
175    std::vector<int32_t> data { 1, 2, 3, 4, 5, 6 };
176    std::vector<ssize_t> shape { 3, 2 };
177    std::vector<ssize_t> strides { 8, 4 };
178
179    auto ptr = data.data();
180    auto vptr = (void *) ptr;
181    auto dtype = py::dtype("int32");
182
183    py::buffer_info buf_ndim1(vptr, 4, "i", 6);
184    py::buffer_info buf_ndim1_null(nullptr, 4, "i", 6);
185    py::buffer_info buf_ndim2(vptr, 4, "i", 2, shape, strides);
186    py::buffer_info buf_ndim2_null(nullptr, 4, "i", 2, shape, strides);
187
188    auto fill = [](py::array arr) {
189        auto req = arr.request();
190        for (int i = 0; i < 6; i++) ((int32_t *) req.ptr)[i] = i + 1;
191        return arr;
192    };
193
194    switch (i) {
195    // shape: (3, 2)
196    case 10: return arr_t(shape, strides, ptr);
197    case 11: return py::array(shape, strides, ptr);
198    case 12: return py::array(dtype, shape, strides, vptr);
199    case 13: return arr_t(shape, ptr);
200    case 14: return py::array(shape, ptr);
201    case 15: return py::array(dtype, shape, vptr);
202    case 16: return arr_t(buf_ndim2);
203    case 17: return py::array(buf_ndim2);
204    // shape: (3, 2) - post-fill
205    case 20: return fill(arr_t(shape, strides));
206    case 21: return py::array(shape, strides, ptr); // can't have nullptr due to templated ctor
207    case 22: return fill(py::array(dtype, shape, strides));
208    case 23: return fill(arr_t(shape));
209    case 24: return py::array(shape, ptr); // can't have nullptr due to templated ctor
210    case 25: return fill(py::array(dtype, shape));
211    case 26: return fill(arr_t(buf_ndim2_null));
212    case 27: return fill(py::array(buf_ndim2_null));
213    // shape: (6, )
214    case 30: return arr_t(6, ptr);
215    case 31: return py::array(6, ptr);
216    case 32: return py::array(dtype, 6, vptr);
217    case 33: return arr_t(buf_ndim1);
218    case 34: return py::array(buf_ndim1);
219    // shape: (6, )
220    case 40: return fill(arr_t(6));
221    case 41: return py::array(6, ptr);  // can't have nullptr due to templated ctor
222    case 42: return fill(py::array(dtype, 6));
223    case 43: return fill(arr_t(buf_ndim1_null));
224    case 44: return fill(py::array(buf_ndim1_null));
225    }
226    return arr_t();
227}
228
229py::list test_dtype_ctors() {
230    py::list list;
231    list.append(py::dtype("int32"));
232    list.append(py::dtype(std::string("float64")));
233    list.append(py::dtype::from_args(py::str("bool")));
234    py::list names, offsets, formats;
235    py::dict dict;
236    names.append(py::str("a")); names.append(py::str("b")); dict["names"] = names;
237    offsets.append(py::int_(1)); offsets.append(py::int_(10)); dict["offsets"] = offsets;
238    formats.append(py::dtype("int32")); formats.append(py::dtype("float64")); dict["formats"] = formats;
239    dict["itemsize"] = py::int_(20);
240    list.append(py::dtype::from_args(dict));
241    list.append(py::dtype(names, formats, offsets, 20));
242    list.append(py::dtype(py::buffer_info((void *) 0, sizeof(unsigned int), "I", 1)));
243    list.append(py::dtype(py::buffer_info((void *) 0, 0, "T{i:a:f:b:}", 1)));
244    return list;
245}
246
247TEST_SUBMODULE(numpy_dtypes, m) {
248    try { py::module::import("numpy"); }
249    catch (...) { return; }
250
251    // typeinfo may be registered before the dtype descriptor for scalar casts to work...
252    py::class_<SimpleStruct>(m, "SimpleStruct");
253
254    PYBIND11_NUMPY_DTYPE(SimpleStruct, bool_, uint_, float_, ldbl_);
255    PYBIND11_NUMPY_DTYPE(PackedStruct, bool_, uint_, float_, ldbl_);
256    PYBIND11_NUMPY_DTYPE(NestedStruct, a, b);
257    PYBIND11_NUMPY_DTYPE(PartialStruct, bool_, uint_, float_, ldbl_);
258    PYBIND11_NUMPY_DTYPE(PartialNestedStruct, a);
259    PYBIND11_NUMPY_DTYPE(StringStruct, a, b);
260    PYBIND11_NUMPY_DTYPE(ArrayStruct, a, b, c, d);
261    PYBIND11_NUMPY_DTYPE(EnumStruct, e1, e2);
262    PYBIND11_NUMPY_DTYPE(ComplexStruct, cflt, cdbl);
263
264    // ... or after
265    py::class_<PackedStruct>(m, "PackedStruct");
266
267    PYBIND11_NUMPY_DTYPE_EX(StructWithUglyNames, __x__, "x", __y__, "y");
268
269    // If uncommented, this should produce a static_assert failure telling the user that the struct
270    // is not a POD type
271//    struct NotPOD { std::string v; NotPOD() : v("hi") {}; };
272//    PYBIND11_NUMPY_DTYPE(NotPOD, v);
273
274    // test_recarray, test_scalar_conversion
275    m.def("create_rec_simple", &create_recarray<SimpleStruct>);
276    m.def("create_rec_packed", &create_recarray<PackedStruct>);
277    m.def("create_rec_nested", [](size_t n) { // test_signature
278        py::array_t<NestedStruct, 0> arr = mkarray_via_buffer<NestedStruct>(n);
279        auto req = arr.request();
280        auto ptr = static_cast<NestedStruct*>(req.ptr);
281        for (size_t i = 0; i < n; i++) {
282            SET_TEST_VALS(ptr[i].a, i);
283            SET_TEST_VALS(ptr[i].b, i + 1);
284        }
285        return arr;
286    });
287    m.def("create_rec_partial", &create_recarray<PartialStruct>);
288    m.def("create_rec_partial_nested", [](size_t n) {
289        py::array_t<PartialNestedStruct, 0> arr = mkarray_via_buffer<PartialNestedStruct>(n);
290        auto req = arr.request();
291        auto ptr = static_cast<PartialNestedStruct*>(req.ptr);
292        for (size_t i = 0; i < n; i++) {
293            SET_TEST_VALS(ptr[i].a, i);
294        }
295        return arr;
296    });
297    m.def("print_rec_simple", &print_recarray<SimpleStruct>);
298    m.def("print_rec_packed", &print_recarray<PackedStruct>);
299    m.def("print_rec_nested", &print_recarray<NestedStruct>);
300
301    // test_format_descriptors
302    m.def("get_format_unbound", []() { return py::format_descriptor<UnboundStruct>::format(); });
303    m.def("print_format_descriptors", []() {
304        py::list l;
305        for (const auto &fmt : {
306            py::format_descriptor<SimpleStruct>::format(),
307            py::format_descriptor<PackedStruct>::format(),
308            py::format_descriptor<NestedStruct>::format(),
309            py::format_descriptor<PartialStruct>::format(),
310            py::format_descriptor<PartialNestedStruct>::format(),
311            py::format_descriptor<StringStruct>::format(),
312            py::format_descriptor<ArrayStruct>::format(),
313            py::format_descriptor<EnumStruct>::format(),
314            py::format_descriptor<ComplexStruct>::format()
315        }) {
316            l.append(py::cast(fmt));
317        }
318        return l;
319    });
320
321    // test_dtype
322    m.def("print_dtypes", []() {
323        py::list l;
324        for (const py::handle &d : {
325            py::dtype::of<SimpleStruct>(),
326            py::dtype::of<PackedStruct>(),
327            py::dtype::of<NestedStruct>(),
328            py::dtype::of<PartialStruct>(),
329            py::dtype::of<PartialNestedStruct>(),
330            py::dtype::of<StringStruct>(),
331            py::dtype::of<ArrayStruct>(),
332            py::dtype::of<EnumStruct>(),
333            py::dtype::of<StructWithUglyNames>(),
334            py::dtype::of<ComplexStruct>()
335        })
336            l.append(py::str(d));
337        return l;
338    });
339    m.def("test_dtype_ctors", &test_dtype_ctors);
340    m.def("test_dtype_methods", []() {
341        py::list list;
342        auto dt1 = py::dtype::of<int32_t>();
343        auto dt2 = py::dtype::of<SimpleStruct>();
344        list.append(dt1); list.append(dt2);
345        list.append(py::bool_(dt1.has_fields())); list.append(py::bool_(dt2.has_fields()));
346        list.append(py::int_(dt1.itemsize())); list.append(py::int_(dt2.itemsize()));
347        return list;
348    });
349    struct TrailingPaddingStruct {
350        int32_t a;
351        char b;
352    };
353    PYBIND11_NUMPY_DTYPE(TrailingPaddingStruct, a, b);
354    m.def("trailing_padding_dtype", []() { return py::dtype::of<TrailingPaddingStruct>(); });
355
356    // test_string_array
357    m.def("create_string_array", [](bool non_empty) {
358        py::array_t<StringStruct, 0> arr = mkarray_via_buffer<StringStruct>(non_empty ? 4 : 0);
359        if (non_empty) {
360            auto req = arr.request();
361            auto ptr = static_cast<StringStruct*>(req.ptr);
362            for (ssize_t i = 0; i < req.size * req.itemsize; i++)
363                static_cast<char*>(req.ptr)[i] = 0;
364            ptr[1].a[0] = 'a'; ptr[1].b[0] = 'a';
365            ptr[2].a[0] = 'a'; ptr[2].b[0] = 'a';
366            ptr[3].a[0] = 'a'; ptr[3].b[0] = 'a';
367
368            ptr[2].a[1] = 'b'; ptr[2].b[1] = 'b';
369            ptr[3].a[1] = 'b'; ptr[3].b[1] = 'b';
370
371            ptr[3].a[2] = 'c'; ptr[3].b[2] = 'c';
372        }
373        return arr;
374    });
375    m.def("print_string_array", &print_recarray<StringStruct>);
376
377    // test_array_array
378    m.def("create_array_array", [](size_t n) {
379        py::array_t<ArrayStruct, 0> arr = mkarray_via_buffer<ArrayStruct>(n);
380        auto ptr = (ArrayStruct *) arr.mutable_data();
381        for (size_t i = 0; i < n; i++) {
382            for (size_t j = 0; j < 3; j++)
383                for (size_t k = 0; k < 4; k++)
384                    ptr[i].a[j][k] = char('A' + (i * 100 + j * 10 + k) % 26);
385            for (size_t j = 0; j < 2; j++)
386                ptr[i].b[j] = int32_t(i * 1000 + j);
387            for (size_t j = 0; j < 3; j++)
388                ptr[i].c[j] = uint8_t(i * 10 + j);
389            for (size_t j = 0; j < 4; j++)
390                for (size_t k = 0; k < 2; k++)
391                    ptr[i].d[j][k] = float(i) * 100.0f + float(j) * 10.0f + float(k);
392        }
393        return arr;
394    });
395    m.def("print_array_array", &print_recarray<ArrayStruct>);
396
397    // test_enum_array
398    m.def("create_enum_array", [](size_t n) {
399        py::array_t<EnumStruct, 0> arr = mkarray_via_buffer<EnumStruct>(n);
400        auto ptr = (EnumStruct *) arr.mutable_data();
401        for (size_t i = 0; i < n; i++) {
402            ptr[i].e1 = static_cast<E1>(-1 + ((int) i % 2) * 2);
403            ptr[i].e2 = static_cast<E2>(1 + (i % 2));
404        }
405        return arr;
406    });
407    m.def("print_enum_array", &print_recarray<EnumStruct>);
408
409    // test_complex_array
410    m.def("create_complex_array", [](size_t n) {
411        py::array_t<ComplexStruct, 0> arr = mkarray_via_buffer<ComplexStruct>(n);
412        auto ptr = (ComplexStruct *) arr.mutable_data();
413        for (size_t i = 0; i < n; i++) {
414            ptr[i].cflt.real(float(i));
415            ptr[i].cflt.imag(float(i) + 0.25f);
416            ptr[i].cdbl.real(double(i) + 0.5);
417            ptr[i].cdbl.imag(double(i) + 0.75);
418        }
419        return arr;
420    });
421    m.def("print_complex_array", &print_recarray<ComplexStruct>);
422
423    // test_array_constructors
424    m.def("test_array_ctors", &test_array_ctors);
425
426    // test_compare_buffer_info
427    struct CompareStruct {
428        bool x;
429        uint32_t y;
430        float z;
431    };
432    PYBIND11_NUMPY_DTYPE(CompareStruct, x, y, z);
433    m.def("compare_buffer_info", []() {
434        py::list list;
435        list.append(py::bool_(py::detail::compare_buffer_info<float>::compare(py::buffer_info(nullptr, sizeof(float), "f", 1))));
436        list.append(py::bool_(py::detail::compare_buffer_info<unsigned>::compare(py::buffer_info(nullptr, sizeof(int), "I", 1))));
437        list.append(py::bool_(py::detail::compare_buffer_info<long>::compare(py::buffer_info(nullptr, sizeof(long), "l", 1))));
438        list.append(py::bool_(py::detail::compare_buffer_info<long>::compare(py::buffer_info(nullptr, sizeof(long), sizeof(long) == sizeof(int) ? "i" : "q", 1))));
439        list.append(py::bool_(py::detail::compare_buffer_info<CompareStruct>::compare(py::buffer_info(nullptr, sizeof(CompareStruct), "T{?:x:3xI:y:f:z:}", 1))));
440        return list;
441    });
442    m.def("buffer_to_dtype", [](py::buffer& buf) { return py::dtype(buf.request()); });
443
444    // test_scalar_conversion
445    m.def("f_simple", [](SimpleStruct s) { return s.uint_ * 10; });
446    m.def("f_packed", [](PackedStruct s) { return s.uint_ * 10; });
447    m.def("f_nested", [](NestedStruct s) { return s.a.uint_ * 10; });
448
449    // test_register_dtype
450    m.def("register_dtype", []() { PYBIND11_NUMPY_DTYPE(SimpleStruct, bool_, uint_, float_, ldbl_); });
451}
452