pbs.py revision 1385
11376Sbinkertn@umich.edu# Copyright (c) 2005 The Regents of The University of Michigan
21376Sbinkertn@umich.edu# All rights reserved.
31376Sbinkertn@umich.edu#
41376Sbinkertn@umich.edu# Redistribution and use in source and binary forms, with or without
51376Sbinkertn@umich.edu# modification, are permitted provided that the following conditions are
61376Sbinkertn@umich.edu# met: redistributions of source code must retain the above copyright
71376Sbinkertn@umich.edu# notice, this list of conditions and the following disclaimer;
81376Sbinkertn@umich.edu# redistributions in binary form must reproduce the above copyright
91376Sbinkertn@umich.edu# notice, this list of conditions and the following disclaimer in the
101376Sbinkertn@umich.edu# documentation and/or other materials provided with the distribution;
111376Sbinkertn@umich.edu# neither the name of the copyright holders nor the names of its
121376Sbinkertn@umich.edu# contributors may be used to endorse or promote products derived from
131376Sbinkertn@umich.edu# this software without specific prior written permission.
141376Sbinkertn@umich.edu#
151376Sbinkertn@umich.edu# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
161376Sbinkertn@umich.edu# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
171376Sbinkertn@umich.edu# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
181376Sbinkertn@umich.edu# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
191376Sbinkertn@umich.edu# OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
201376Sbinkertn@umich.edu# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
211376Sbinkertn@umich.edu# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
221376Sbinkertn@umich.edu# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
231376Sbinkertn@umich.edu# THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
241376Sbinkertn@umich.edu# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
251376Sbinkertn@umich.edu# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
261376Sbinkertn@umich.edu#
271376Sbinkertn@umich.edu# Authors: Nathan Binkert
281376Sbinkertn@umich.edu
291385Sbinkertn@umich.eduimport os, popen2, re, sys
301376Sbinkertn@umich.edu
311385Sbinkertn@umich.educlass MyPOpen(object):
321385Sbinkertn@umich.edu    def __init__(self, cmd, input = None, output = None, bufsize = -1):
331385Sbinkertn@umich.edu        self.sts = -1
341376Sbinkertn@umich.edu
351385Sbinkertn@umich.edu        if input is None:
361385Sbinkertn@umich.edu            p2c_read, p2c_write = os.pipe()
371385Sbinkertn@umich.edu            self.tochild = os.fdopen(p2c_write, 'w', bufsize)
381385Sbinkertn@umich.edu        else:
391385Sbinkertn@umich.edu            p2c_write = None
401385Sbinkertn@umich.edu            if isinstance(input, file):
411385Sbinkertn@umich.edu                p2c_read = input.fileno()
421385Sbinkertn@umich.edu            elif isinstance(input, str):
431385Sbinkertn@umich.edu                input = file(input, 'r')
441385Sbinkertn@umich.edu                p2c_read = input.fileno()
451385Sbinkertn@umich.edu            elif isinstance(input, int):
461385Sbinkertn@umich.edu                p2c_read = input
471385Sbinkertn@umich.edu            else:
481385Sbinkertn@umich.edu                raise AttributeError
491385Sbinkertn@umich.edu
501385Sbinkertn@umich.edu        if output is None:
511385Sbinkertn@umich.edu            c2p_read, c2p_write = os.pipe()
521385Sbinkertn@umich.edu            self.fromchild = os.fdopen(c2p_read, 'r', bufsize)
531385Sbinkertn@umich.edu        else:
541385Sbinkertn@umich.edu            c2p_read = None
551385Sbinkertn@umich.edu            if isinstance(output, file):
561385Sbinkertn@umich.edu                c2p_write = output.fileno()
571385Sbinkertn@umich.edu            elif isinstance(output, str):
581385Sbinkertn@umich.edu                output = file(output, 'w')
591385Sbinkertn@umich.edu                c2p_write = output.fileno()
601385Sbinkertn@umich.edu            elif isinstance(output, int):
611385Sbinkertn@umich.edu                c2p_write = output
621385Sbinkertn@umich.edu            else:
631385Sbinkertn@umich.edu                raise AttributeError
641385Sbinkertn@umich.edu
651385Sbinkertn@umich.edu        self.pid = os.fork()
661385Sbinkertn@umich.edu        if self.pid == 0:
671385Sbinkertn@umich.edu            os.dup2(p2c_read, 0)
681385Sbinkertn@umich.edu            os.dup2(c2p_write, 1)
691385Sbinkertn@umich.edu            os.dup2(c2p_write, 2)
701385Sbinkertn@umich.edu            if isinstance(cmd, basestring):
711385Sbinkertn@umich.edu                cmd = ['/bin/sh', '-c', cmd]
721385Sbinkertn@umich.edu            if False:
731385Sbinkertn@umich.edu                for i in range(3, MAXFD):
741385Sbinkertn@umich.edu                    try:
751385Sbinkertn@umich.edu                        os.close(i)
761385Sbinkertn@umich.edu                    except OSError:
771385Sbinkertn@umich.edu                        pass
781385Sbinkertn@umich.edu            try:
791385Sbinkertn@umich.edu                os.execvp(cmd[0], cmd)
801385Sbinkertn@umich.edu            finally:
811385Sbinkertn@umich.edu                os._exit(1)
821385Sbinkertn@umich.edu
831385Sbinkertn@umich.edu        os.close(p2c_read)
841385Sbinkertn@umich.edu        os.close(c2p_write)
851385Sbinkertn@umich.edu
861385Sbinkertn@umich.edu    def poll(self):
871385Sbinkertn@umich.edu        if self.sts < 0:
881385Sbinkertn@umich.edu            pid, sts = os.waitpid(self.pid, os.WNOHANG)
891385Sbinkertn@umich.edu            if pid == self.pid:
901385Sbinkertn@umich.edu                self.sts = sts
911385Sbinkertn@umich.edu        return self.sts
921385Sbinkertn@umich.edu
931385Sbinkertn@umich.edu    def wait(self):
941385Sbinkertn@umich.edu        if self.sts < 0:
951385Sbinkertn@umich.edu            pid, sts = os.waitpid(self.pid, 0)
961385Sbinkertn@umich.edu            if pid == self.pid:
971385Sbinkertn@umich.edu                self.sts = sts
981385Sbinkertn@umich.edu        return self.sts
991376Sbinkertn@umich.edu
1001376Sbinkertn@umich.educlass qsub:
1011376Sbinkertn@umich.edu    def __init__(self):
1021376Sbinkertn@umich.edu        self.hold = False
1031376Sbinkertn@umich.edu        self.join = False
1041376Sbinkertn@umich.edu        self.keep_stdout = False
1051376Sbinkertn@umich.edu        self.keep_stderr = False
1061376Sbinkertn@umich.edu        self.node_type = ''
1071376Sbinkertn@umich.edu        self.mail_abort = False
1081376Sbinkertn@umich.edu        self.mail_begin = False
1091376Sbinkertn@umich.edu        self.mail_end = False
1101376Sbinkertn@umich.edu        self.name = ''
1111376Sbinkertn@umich.edu        self.stdout = ''
1121376Sbinkertn@umich.edu        self.priority = 0
1131376Sbinkertn@umich.edu        self.queue = ''
1141376Sbinkertn@umich.edu        self.pbshost = ''
1151376Sbinkertn@umich.edu        self.qsub = 'qsub'
1161376Sbinkertn@umich.edu        self.env = {}
1171376Sbinkertn@umich.edu
1181385Sbinkertn@umich.edu    def build(self, script, args = []):
1191385Sbinkertn@umich.edu        self.cmd = [ self.qsub ]
1201376Sbinkertn@umich.edu
1211376Sbinkertn@umich.edu        if self.env:
1221376Sbinkertn@umich.edu            arg = '-v'
1231376Sbinkertn@umich.edu            arg += ','.join([ '%s=%s' % i for i in self.env.iteritems() ])
1241385Sbinkertn@umich.edu            self.cmd.append(arg)
1251376Sbinkertn@umich.edu
1261376Sbinkertn@umich.edu        if self.hold:
1271385Sbinkertn@umich.edu            self.cmd.append('-h')
1281376Sbinkertn@umich.edu
1291376Sbinkertn@umich.edu        if len(self.stdout):
1301385Sbinkertn@umich.edu            self.cmd.append('-olocalhost:' + self.stdout)
1311376Sbinkertn@umich.edu
1321376Sbinkertn@umich.edu        if self.keep_stdout and self.keep_stderr:
1331385Sbinkertn@umich.edu            self.cmd.append('-koe')
1341376Sbinkertn@umich.edu        elif self.keep_stdout:
1351385Sbinkertn@umich.edu            self.cmd.append('-ko')
1361376Sbinkertn@umich.edu        elif self.keep_stderr:
1371385Sbinkertn@umich.edu            self.cmd.append('-ke')
1381376Sbinkertn@umich.edu        else:
1391385Sbinkertn@umich.edu            self.cmd.append('-kn')
1401376Sbinkertn@umich.edu
1411376Sbinkertn@umich.edu        if self.join:
1421385Sbinkertn@umich.edu            self.cmd.append('-joe')
1431376Sbinkertn@umich.edu
1441376Sbinkertn@umich.edu        if len(self.node_type):
1451385Sbinkertn@umich.edu            self.cmd.append('-lnodes=' + self.node_type)
1461376Sbinkertn@umich.edu
1471376Sbinkertn@umich.edu        if self.mail_abort or self.mail_begin or self.mail_end:
1481376Sbinkertn@umich.edu            flags = ''
1491376Sbinkertn@umich.edu            if self.mail_abort:
1501376Sbinkertn@umich.edu                flags.append('a')
1511376Sbinkertn@umich.edu            if self.mail_begin:
1521376Sbinkertn@umich.edu                flags.append('b')
1531376Sbinkertn@umich.edu            if self.mail_end:
1541376Sbinkertn@umich.edu                flags.append('e')
1551376Sbinkertn@umich.edu            if len(flags):
1561385Sbinkertn@umich.edu                self.cmd.append('-m ' + flags)
1571376Sbinkertn@umich.edu
1581376Sbinkertn@umich.edu        if len(self.name):
1591385Sbinkertn@umich.edu            self.cmd.append("-N%s" % self.name)
1601376Sbinkertn@umich.edu
1611376Sbinkertn@umich.edu        if self.priority != 0:
1621385Sbinkertn@umich.edu            self.cmd.append('-p' + self.priority)
1631376Sbinkertn@umich.edu
1641376Sbinkertn@umich.edu        if len(self.queue):
1651385Sbinkertn@umich.edu            self.cmd.append('-q' + self.queue)
1661376Sbinkertn@umich.edu
1671385Sbinkertn@umich.edu        self.cmd.extend(args)
1681385Sbinkertn@umich.edu        self.script = script
1691385Sbinkertn@umich.edu        self.command = ' '.join(self.cmd + [ self.script ])
1701376Sbinkertn@umich.edu
1711385Sbinkertn@umich.edu    def do(self):
1721385Sbinkertn@umich.edu        pbs = MyPOpen(self.cmd + [ self.script ])
1731385Sbinkertn@umich.edu        self.result = pbs.fromchild.read()
1741385Sbinkertn@umich.edu        ec = pbs.wait()
1751376Sbinkertn@umich.edu
1761385Sbinkertn@umich.edu        if ec != 0 and self.pbshost:
1771385Sbinkertn@umich.edu            cmd = ' '.join(self.cmd + [ '-' ])
1781385Sbinkertn@umich.edu            cmd = [ 'ssh', '-x', self.pbshost, cmd ]
1791385Sbinkertn@umich.edu            self.command = ' '.join(cmd)
1801385Sbinkertn@umich.edu            ssh = MyPOpen(cmd, input = self.script)
1811385Sbinkertn@umich.edu            self.result = ssh.fromchild.read()
1821385Sbinkertn@umich.edu            ec = ssh.wait()
1831376Sbinkertn@umich.edu
1841376Sbinkertn@umich.edu        return ec
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