1#!/usr/bin/env python
2# Copyright (c) 2005 The Regents of The University of Michigan
3# All rights reserved.
4#
5# Redistribution and use in source and binary forms, with or without
6# modification, are permitted provided that the following conditions are
7# met: redistributions of source code must retain the above copyright
8# notice, this list of conditions and the following disclaimer;
9# redistributions in binary form must reproduce the above copyright
10# notice, this list of conditions and the following disclaimer in the
11# documentation and/or other materials provided with the distribution;
12# neither the name of the copyright holders nor the names of its
13# contributors may be used to endorse or promote products derived from
14# this software without specific prior written permission.
15#
16# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
17# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
18# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
19# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
20# OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
21# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
22# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
23# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
24# THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
25# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
26# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
27#
28# Authors: Ali Saidi
29# Nathan Binkert
30
31import os, os.path, re, socket, sys
32from os import environ as env, listdir
33from os.path import basename, isdir, isfile, islink, join as joinpath, normpath
34from filecmp import cmp as filecmp
35from shutil import copy
36
37def nfspath(dir):
38 if dir.startswith('/.automount/'):
39 dir = '/n/%s' % dir[12:]
40 elif not dir.startswith('/n/'):
41 dir = '/n/%s%s' % (socket.gethostname().split('.')[0], dir)
42 return dir
43
44def syncdir(srcdir, destdir):
45 srcdir = normpath(srcdir)
46 destdir = normpath(destdir)
47 if not isdir(destdir):
48 sys.exit('destination directory "%s" does not exist' % destdir)
49
50 for root, dirs, files in os.walk(srcdir):
51 root = normpath(root)
52 prefix = os.path.commonprefix([root, srcdir])
53 root = root[len(prefix):]
54 if root.startswith('/'):
55 root = root[1:]
56 for rem in [ d for d in dirs if d.startswith('.') or d == 'SCCS']:
57 dirs.remove(rem)
58
59 for entry in dirs:
60 newdir = joinpath(destdir, root, entry)
61 if not isdir(newdir):
62 os.mkdir(newdir)
63 print 'mkdir', newdir
64
65 for i,d in enumerate(dirs):
66 if islink(joinpath(srcdir, root, d)):
67 dirs[i] = joinpath(d, '.')
68
69 for entry in files:
70 dest = normpath(joinpath(destdir, root, entry))
71 src = normpath(joinpath(srcdir, root, entry))
72 if not isfile(dest) or not filecmp(src, dest):
73 print 'copy %s %s' % (dest, src)
74 copy(src, dest)
75
76progpath = nfspath(sys.path[0])
77progname = basename(sys.argv[0])
78usage = """\
79Usage:
80 %(progname)s [-c] [-e] [-f] [-j <jobfile>] [-q queue] [-v] <regexp>
81 -c clean directory if job can be run
82 -e only echo pbs command info, don't actually send the job
83 -f force the job to run regardless of state
84 -q <queue> submit job to the named queue
| 1#!/usr/bin/env python
2# Copyright (c) 2005 The Regents of The University of Michigan
3# All rights reserved.
4#
5# Redistribution and use in source and binary forms, with or without
6# modification, are permitted provided that the following conditions are
7# met: redistributions of source code must retain the above copyright
8# notice, this list of conditions and the following disclaimer;
9# redistributions in binary form must reproduce the above copyright
10# notice, this list of conditions and the following disclaimer in the
11# documentation and/or other materials provided with the distribution;
12# neither the name of the copyright holders nor the names of its
13# contributors may be used to endorse or promote products derived from
14# this software without specific prior written permission.
15#
16# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
17# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
18# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
19# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
20# OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
21# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
22# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
23# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
24# THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
25# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
26# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
27#
28# Authors: Ali Saidi
29# Nathan Binkert
30
31import os, os.path, re, socket, sys
32from os import environ as env, listdir
33from os.path import basename, isdir, isfile, islink, join as joinpath, normpath
34from filecmp import cmp as filecmp
35from shutil import copy
36
37def nfspath(dir):
38 if dir.startswith('/.automount/'):
39 dir = '/n/%s' % dir[12:]
40 elif not dir.startswith('/n/'):
41 dir = '/n/%s%s' % (socket.gethostname().split('.')[0], dir)
42 return dir
43
44def syncdir(srcdir, destdir):
45 srcdir = normpath(srcdir)
46 destdir = normpath(destdir)
47 if not isdir(destdir):
48 sys.exit('destination directory "%s" does not exist' % destdir)
49
50 for root, dirs, files in os.walk(srcdir):
51 root = normpath(root)
52 prefix = os.path.commonprefix([root, srcdir])
53 root = root[len(prefix):]
54 if root.startswith('/'):
55 root = root[1:]
56 for rem in [ d for d in dirs if d.startswith('.') or d == 'SCCS']:
57 dirs.remove(rem)
58
59 for entry in dirs:
60 newdir = joinpath(destdir, root, entry)
61 if not isdir(newdir):
62 os.mkdir(newdir)
63 print 'mkdir', newdir
64
65 for i,d in enumerate(dirs):
66 if islink(joinpath(srcdir, root, d)):
67 dirs[i] = joinpath(d, '.')
68
69 for entry in files:
70 dest = normpath(joinpath(destdir, root, entry))
71 src = normpath(joinpath(srcdir, root, entry))
72 if not isfile(dest) or not filecmp(src, dest):
73 print 'copy %s %s' % (dest, src)
74 copy(src, dest)
75
76progpath = nfspath(sys.path[0])
77progname = basename(sys.argv[0])
78usage = """\
79Usage:
80 %(progname)s [-c] [-e] [-f] [-j <jobfile>] [-q queue] [-v] <regexp>
81 -c clean directory if job can be run
82 -e only echo pbs command info, don't actually send the job
83 -f force the job to run regardless of state
84 -q <queue> submit job to the named queue
|
85 -j <jobfile> specify the jobfile (default is <basedir>/test.py)
| 85 -j <jobfile> specify the jobfile (default is <rootdir>/Test.py)
|
86 -v be verbose
87
88 %(progname)s [-j <jobfile>] -l [-v] <regexp>
| 86 -v be verbose
87
88 %(progname)s [-j <jobfile>] -l [-v] <regexp>
|
89 -j <jobfile> specify the jobfile (default is <basedir>/test.py)
| 89 -j <jobfile> specify the jobfile (default is <rootdir>/Test.py)
|
90 -l list job names, don't submit
91 -v be verbose (list job parameters)
92
93 %(progname)s -h
94 -h display this help
95""" % locals()
96
97try:
98 import getopt
| 90 -l list job names, don't submit
91 -v be verbose (list job parameters)
92
93 %(progname)s -h
94 -h display this help
95""" % locals()
96
97try:
98 import getopt
|
99 opts, args = getopt.getopt(sys.argv[1:], '-CRcd:efhj:lq:v')
| 99 opts, args = getopt.getopt(sys.argv[1:], '-Ccdefhj:lq:Rt:v')
|
100except getopt.GetoptError:
101 sys.exit(usage)
102
| 100except getopt.GetoptError:
101 sys.exit(usage)
102
|
| 103depend = False
|
103clean = False
104onlyecho = False
105exprs = []
106force = False
107listonly = False
108queue = ''
109verbose = False
| 104clean = False
105onlyecho = False
106exprs = []
107force = False
108listonly = False
109queue = ''
110verbose = False
|
110jfile = 'Base/test.py'
| 111jfile = 'Test.py'
|
111docpts = False
112doruns = True
113runflag = False
| 112docpts = False
113doruns = True
114runflag = False
|
| 115node_type = 'FAST'
|
114
115for opt,arg in opts:
116 if opt == '-C':
117 docpts = True
| 116
117for opt,arg in opts:
118 if opt == '-C':
119 docpts = True
|
118 if opt == '-R':
119 runflag = True
| |
120 if opt == '-c':
121 clean = True
| 120 if opt == '-c':
121 clean = True
|
| 122 if opt == '-d':
123 depend = True
|
122 if opt == '-e':
123 onlyecho = True
124 if opt == '-f':
125 force = True
126 if opt == '-h':
127 print usage
128 sys.exit(0)
129 if opt == '-j':
130 jfile = arg
131 if opt == '-l':
132 listonly = True
133 if opt == '-q':
134 queue = arg
| 124 if opt == '-e':
125 onlyecho = True
126 if opt == '-f':
127 force = True
128 if opt == '-h':
129 print usage
130 sys.exit(0)
131 if opt == '-j':
132 jfile = arg
133 if opt == '-l':
134 listonly = True
135 if opt == '-q':
136 queue = arg
|
| 137 if opt == '-R':
138 runflag = True
139 if opt == '-t':
140 node_type = arg
|
135 if opt == '-v':
136 verbose = True
137
138if docpts:
139 doruns = runflag
140
141for arg in args:
142 exprs.append(re.compile(arg))
143
144import jobfile, pbs
145from job import JobDir, date
146
147conf = jobfile.JobFile(jfile)
148
149if not listonly and not onlyecho and isdir(conf.linkdir):
150 if verbose:
151 print 'Checking for outdated files in Link directory'
| 141 if opt == '-v':
142 verbose = True
143
144if docpts:
145 doruns = runflag
146
147for arg in args:
148 exprs.append(re.compile(arg))
149
150import jobfile, pbs
151from job import JobDir, date
152
153conf = jobfile.JobFile(jfile)
154
155if not listonly and not onlyecho and isdir(conf.linkdir):
156 if verbose:
157 print 'Checking for outdated files in Link directory'
|
| 158 if not isdir(conf.basedir):
159 os.mkdir(conf.basedir)
|
152 syncdir(conf.linkdir, conf.basedir)
153
154jobnames = {}
155joblist = []
156
157if docpts and doruns:
158 gen = conf.alljobs()
159elif docpts:
160 gen = conf.checkpoints()
161elif doruns:
162 gen = conf.jobs()
163
164for job in gen:
165 if job.name in jobnames:
166 continue
167
168 if exprs:
169 for expr in exprs:
170 if expr.match(job.name):
171 joblist.append(job)
172 break
173 else:
174 joblist.append(job)
175
176if listonly:
177 if verbose:
178 for job in joblist:
179 job.printinfo()
180 else:
181 for job in joblist:
182 print job.name
183 sys.exit(0)
184
185if not onlyecho:
186 newlist = []
187 for job in joblist:
188 jobdir = JobDir(joinpath(conf.rootdir, job.name))
189 if jobdir.exists():
190 if not force:
191 status = jobdir.getstatus()
192 if status == 'queued':
193 continue
194
195 if status == 'running':
196 continue
197
198 if status == 'success':
199 continue
200
201 if not clean:
202 sys.exit('job directory %s not clean!' % jobdir)
203
204 jobdir.clean()
205 newlist.append(job)
206 joblist = newlist
207
208class NameHack(object):
209 def __init__(self, host='pbs.pool', port=24465):
210 self.host = host
211 self.port = port
212 self.socket = None
213
214 def setname(self, jobid, jobname):
215 try:
216 jobid = int(jobid)
217 except ValueError:
218 jobid = int(jobid.strip().split('.')[0])
219
220 jobname = jobname.strip()
221 # since pbs can handle jobnames of 15 characters or less,
222 # don't use the raj hack.
223 if len(jobname) <= 15:
224 return
225
226 if self.socket is None:
227 import socket
228 self.socket = socket.socket()
229 # Connect to pbs.pool and send the jobid/jobname pair to port
230 # 24465 (Raj didn't realize that there are only 64k ports and
231 # setup inetd to point to port 90001)
232 self.socket.connect((self.host, self.port))
233
234 self.socket.send("%s %s\n" % (jobid, jobname))
235
236namehack = NameHack()
237
238for job in joblist:
239 jobdir = JobDir(joinpath(conf.rootdir, job.name))
| 160 syncdir(conf.linkdir, conf.basedir)
161
162jobnames = {}
163joblist = []
164
165if docpts and doruns:
166 gen = conf.alljobs()
167elif docpts:
168 gen = conf.checkpoints()
169elif doruns:
170 gen = conf.jobs()
171
172for job in gen:
173 if job.name in jobnames:
174 continue
175
176 if exprs:
177 for expr in exprs:
178 if expr.match(job.name):
179 joblist.append(job)
180 break
181 else:
182 joblist.append(job)
183
184if listonly:
185 if verbose:
186 for job in joblist:
187 job.printinfo()
188 else:
189 for job in joblist:
190 print job.name
191 sys.exit(0)
192
193if not onlyecho:
194 newlist = []
195 for job in joblist:
196 jobdir = JobDir(joinpath(conf.rootdir, job.name))
197 if jobdir.exists():
198 if not force:
199 status = jobdir.getstatus()
200 if status == 'queued':
201 continue
202
203 if status == 'running':
204 continue
205
206 if status == 'success':
207 continue
208
209 if not clean:
210 sys.exit('job directory %s not clean!' % jobdir)
211
212 jobdir.clean()
213 newlist.append(job)
214 joblist = newlist
215
216class NameHack(object):
217 def __init__(self, host='pbs.pool', port=24465):
218 self.host = host
219 self.port = port
220 self.socket = None
221
222 def setname(self, jobid, jobname):
223 try:
224 jobid = int(jobid)
225 except ValueError:
226 jobid = int(jobid.strip().split('.')[0])
227
228 jobname = jobname.strip()
229 # since pbs can handle jobnames of 15 characters or less,
230 # don't use the raj hack.
231 if len(jobname) <= 15:
232 return
233
234 if self.socket is None:
235 import socket
236 self.socket = socket.socket()
237 # Connect to pbs.pool and send the jobid/jobname pair to port
238 # 24465 (Raj didn't realize that there are only 64k ports and
239 # setup inetd to point to port 90001)
240 self.socket.connect((self.host, self.port))
241
242 self.socket.send("%s %s\n" % (jobid, jobname))
243
244namehack = NameHack()
245
246for job in joblist:
247 jobdir = JobDir(joinpath(conf.rootdir, job.name))
|
| 248 if depend:
249 cptdir = JobDir(joinpath(conf.rootdir, job.checkpoint.name))
250 cptjob = cptdir.readval('.pbs_jobid')
|
240
241 if not onlyecho:
242 jobdir.create()
243
244 print 'Job name: %s' % job.name
245 print 'Job directory: %s' % jobdir
246
247 qsub = pbs.qsub()
248 qsub.pbshost = 'simpool.eecs.umich.edu'
249 qsub.stdout = jobdir.file('jobout')
250 qsub.name = job.name[:15]
251 qsub.join = True
| 251
252 if not onlyecho:
253 jobdir.create()
254
255 print 'Job name: %s' % job.name
256 print 'Job directory: %s' % jobdir
257
258 qsub = pbs.qsub()
259 qsub.pbshost = 'simpool.eecs.umich.edu'
260 qsub.stdout = jobdir.file('jobout')
261 qsub.name = job.name[:15]
262 qsub.join = True
|
252 qsub.node_type = 'FAST'
| 263 qsub.node_type = node_type
|
253 qsub.env['ROOTDIR'] = conf.rootdir
254 qsub.env['JOBNAME'] = job.name
| 264 qsub.env['ROOTDIR'] = conf.rootdir
265 qsub.env['JOBNAME'] = job.name
|
255 if len(queue):
| 266 if depend:
267 qsub.afterok = cptjob
268 if queue:
|
256 qsub.queue = queue
257 qsub.build(joinpath(progpath, 'job.py'))
258
259 if verbose:
260 print 'PBS Command: %s' % qsub.command
261
262 if not onlyecho:
263 ec = qsub.do()
264 if ec == 0:
265 jobid = qsub.result
266 print 'PBS Jobid: %s' % jobid
267 namehack.setname(jobid, job.name)
268 queued = date()
269 jobdir.echofile('.pbs_jobid', jobid)
270 jobdir.echofile('.pbs_jobname', job.name)
271 jobdir.echofile('.queued', queued)
272 jobdir.setstatus('queued on %s' % queued)
273 else:
274 print 'PBS Failed'
| 269 qsub.queue = queue
270 qsub.build(joinpath(progpath, 'job.py'))
271
272 if verbose:
273 print 'PBS Command: %s' % qsub.command
274
275 if not onlyecho:
276 ec = qsub.do()
277 if ec == 0:
278 jobid = qsub.result
279 print 'PBS Jobid: %s' % jobid
280 namehack.setname(jobid, job.name)
281 queued = date()
282 jobdir.echofile('.pbs_jobid', jobid)
283 jobdir.echofile('.pbs_jobname', job.name)
284 jobdir.echofile('.queued', queued)
285 jobdir.setstatus('queued on %s' % queued)
286 else:
287 print 'PBS Failed'
|